Protein
MCA_03684_1
Length
112 amino acids
Gene name: SMD3
Description: Small nuclear ribonucleoprotein Sm D3
Browser: contigC:767880-768425+
RNA-seq: read pairs 643, FPKM 70.3, percentile rank 72.7% (100% = highest expression)
Protein function
| Annotation: | SMD3 | Small nuclear ribonucleoprotein Sm D3 | |
|---|---|---|---|
| KEGG: | K11088 | SNRPD3 | small nuclear ribonucleoprotein D3 |
| EGGNOG: | 0PP13 | SMD3 | Small nuclear ribonucleoprotein |
| SGD closest match: | S000004137 | SMD3 | Small nuclear ribonucleoprotein Sm D3 |
| CGD closest match: | CAL0000184508 | SMD3 | mRNA splicing protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_02056_1 | 93.81% | 97 | 1e-62 | MIA_02056_1 |
| A0A0J9XIN3_GEOCN | 85.11% | 94 | 2e-58 | Similar to Saccharomyces cerevisiae YLR147C SMD3 Core Sm protein Sm D3 OS=Geotrichum candidum GN=BN980_GECA19s01594g PE=4 SV=1 |
| A0A060T2D4_BLAAD | 81.72% | 93 | 9e-55 | ARAD1C30668p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C30668g PE=4 SV=1 |
| A0A1E3PNQ5_9ASCO | 81.82% | 88 | 5e-52 | Sm-like ribonucleo protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_40243 PE=4 SV=1 |
| Q6CGI5_YARLI | 79.35% | 92 | 1e-51 | YALI0A19030p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A19030g PE=4 SV=1 |
| UniRef50_Q6CGI5 | 79.35% | 92 | 3e-48 | YALI0A19030p n=6 Tax=Eukaryota TaxID=2759 RepID=Q6CGI5_YARLI |
| A0A1E4TIZ1_9ASCO | 58.76% | 97 | 4e-38 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_308 PE=4 SV=1 |
| SMD3_YEAST | 56.25% | 96 | 1e-37 | Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMD3 PE=1 SV=1 |
| Q59NQ6_CANAL | 61.45% | 83 | 3e-34 | mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SMD3 PE=4 SV=1 |
| A0A167CK75_9ASCO | 32.39% | 71 | 5e-07 | Smd1p OS=Sugiyamaella lignohabitans GN=SMD1 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0379
Protein family membership
- Small nuclear ribonucleoprotein Sm D3 (IPR034099)
Domains and repeats
-
Domain
1
20
40
60
80
100
112
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Residue annotation
-
Sm1 motif cd01721
-
putative hexamer i...
-
heptamer interface...
-
RNA binding site c...
-
Sm2 motif cd01721
Protein sequence
>MCA_03684_1 MGSIGIPIKLLNEAQGHIVTLELSSGETYRGKLLEAEDNMNVQLRDVTVTARDGRVSHLEQVYVRGSHVRMFIVPDMLKG APMFRPKTLAKVRGSQQSKMRGGGVKRRGGQR
GO term prediction
Biological Process
GO:0000387 spliceosomal snRNP assembly
Molecular Function
None predicted.
Cellular Component
GO:0005681 spliceosomal complex