Protein

MIA_01893_1

Length
420 amino acids

Browser: contig02:1998249-1999512-

Protein function

EGGNOG:0PJB3FG04470.1rna polymerase I subunit
SGD closest match:S000005867RPA43DNA-directed RNA polymerase I subunit RPA43
CGD closest match:CAL0000185748CAALFM_CR01950WADNA-directed RNA polymerase I subunit

Protein alignments

%idAln lengthE-value
MCA_02765_147.10%2592e-73MCA_02765_1
A0A161HL94_9ASCO44.96%2582e-66DNA-directed RNA polymerase I subunit RPA43 OS=Sugiyamaella lignohabitans GN=RPA43 PE=4 SV=1
UniRef50_A0A161HL9444.96%2586e-63DNA-directed RNA polymerase I subunit RPA43 n=1 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A161HL94_9ASCO
A0A0J9X5I5_GEOCN45.66%2652e-65Similar to Saccharomyces cerevisiae YOR340C RPA43 RNA polymerase I subunit A43 OS=Geotrichum candidum GN=BN980_GECA03s05653g PE=4 SV=1
A0A060SX99_BLAAD39.30%2853e-63ARAD1A11660p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A11660g PE=4 SV=1
Q6C2P5_YARLI38.91%2752e-55YALI0F06182p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F06182g PE=4 SV=1
A0A1E3PGM9_9ASCO35.23%2645e-47Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52204 PE=4 SV=1
A0A1D8PS34_CANAL39.60%2025e-46DNA-directed RNA polymerase I subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR01950WA PE=4 SV=1
RPA43_YEAST32.03%2818e-46DNA-directed RNA polymerase I subunit RPA43 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPA43 PE=1 SV=2
A0A1E4TB45_9ASCO36.75%1662e-31Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_32368 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0766

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 50 100 150 200 250 300 350 420

Detailed signature matches

  1. Domain IPR005576
    RNA polymerase Rpb7, N-terminal
    1. PF03876 (SHS2_Rpb7-N)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. cd04328 (RNAP_I_Rpa...)
  3. mobidb-lite (disord...)

Residue annotation

  1. putative Rpa14 int...

Protein sequence

>MIA_01893_1
MTTESTVVTEHAPTTKRQKPASGRATRQRVKSYAELKNPVDPATGLSQCFRKVTTTMYVSLAPMYSLNPVYGIKSQHLDP
LLMTWYAPVGGVVLAYNSLQLLGQDEGEYRARKKAAAHTTDDGDDEILLPVGKIVHESPYAFLWIAVDQLIWKPQQGDVV
QGVINLQAPSHLSLLVNDVFHASIRRDSIPEDWEFVYFEADETYYDDNDETANAVDAAVESMEKDQQQKDQAKEASATTA
DGAADNKDKADANKLAGASKSLGYWVDGNGDKVYEVINFSIKRVLVSGRLISVQGTLRDGNSTYSKTSSDGSNSSFSSTA
TSSSAALSAAKKPKKIVFGDDDVPQPTKKVFTDDDTEMDNISERINKEIEATGGSALDSATSVPAAAPASGLPKQTDDDD
DDDEAAPKYAEDSDSDDDSD

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated

Molecular Function

GO:0003899 DNA-directed 5'-3' RNA polymerase activity

Cellular Component

None predicted.