Protein
MCA_02765_1
Length
423 amino acids
Gene name: RPA43
Description: DNA-directed RNA polymerase I subunit RPA43
Browser: contigB:2314536-2315808+
RNA-seq: read pairs 1908, FPKM 55.6, percentile rank 67.7% (100% = highest expression)
Protein function
| Annotation: | RPA43 | DNA-directed RNA polymerase I subunit RPA43 | |
|---|---|---|---|
| KEGG: | K03004 | RPA43 | DNA-directed RNA polymerase I subunit RPA43 |
| EGGNOG: | 0PJB3 | FG04470.1 | rna polymerase I subunit |
| SGD closest match: | S000005867 | RPA43 | DNA-directed RNA polymerase I subunit RPA43 |
| CGD closest match: | CAL0000185748 | CAALFM_CR01950WA | DNA-directed RNA polymerase I subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01893_1 | 45.29% | 276 | 6e-79 | MIA_01893_1 |
| A0A0J9X5I5_GEOCN | 39.60% | 250 | 1e-57 | Similar to Saccharomyces cerevisiae YOR340C RPA43 RNA polymerase I subunit A43 OS=Geotrichum candidum GN=BN980_GECA03s05653g PE=4 SV=1 |
| UniRef50_A0A0J9X5I5 | 39.60% | 250 | 3e-54 | Similar to Saccharomyces cerevisiae YOR340C RPA43 RNA polymerase I subunit A43 n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X5I5_GEOCN |
| A0A161HL94_9ASCO | 34.84% | 310 | 2e-53 | DNA-directed RNA polymerase I subunit RPA43 OS=Sugiyamaella lignohabitans GN=RPA43 PE=4 SV=1 |
| A0A060SX99_BLAAD | 35.06% | 251 | 2e-52 | ARAD1A11660p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A11660g PE=4 SV=1 |
| A0A1E3PGM9_9ASCO | 38.91% | 239 | 7e-46 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52204 PE=4 SV=1 |
| A0A1D8PS34_CANAL | 34.05% | 279 | 5e-46 | DNA-directed RNA polymerase I subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR01950WA PE=4 SV=1 |
| Q6C2P5_YARLI | 35.39% | 243 | 1e-45 | YALI0F06182p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F06182g PE=4 SV=1 |
| RPA43_YEAST | 33.06% | 245 | 3e-43 | DNA-directed RNA polymerase I subunit RPA43 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPA43 PE=1 SV=2 |
| A0A1E4TB45_9ASCO | 31.90% | 232 | 2e-34 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_32368 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.2179
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
300
350
423
Detailed signature matches
-
-
PF03876 (SHS2_Rpb7-N)
-
no IPR
Unintegrated signatures
-
cd04328 (RNAP_I_Rpa...)
-
mobidb-lite (disord...)
Residue annotation
-
putative Rpa14 int...
Protein sequence
>MCA_02765_1 MTSEIEVEAPSISNGFEKKRKLDNFEHSSSKKTKGSSNKLSIDPKTGLSQCFSLVHTTLYLPLAPCYILKPNFGIQTQHL DPLLLSWYGPLGGVILAYQNLKLLGQSEEEQEVANEDSEAFGKIIHESPYSYFWISVDFLIWKPQPGQVIKGDVNFQASS HISLLVHGVFLANIRREDIPESWQFVFFEADENAENSEDVQGGEEGEQGSSQAADAVNKIADDIQEEEMKKNGEYTKAKE MQNAVKSLGYWVDENGQKVNDTLRFNVKRIFSSGKVVSLQGTLLGENMTGQARKPRNFEYNSNGGSYGNNDNANNTAATE VVKPKHKKFFDDVEDKTDLFTAESTATALPVEKEMAKNSNNQEDDDEESSKSSQVGSDSELDFDEKNKEKADAKNDGTLL PVTNGDEVPQYQEDSDSDDSDSD
GO term prediction
Biological Process
GO:0006351 transcription, DNA-templated
Molecular Function
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
Cellular Component
None predicted.