Protein
MIA_01766_1
Length
1,062 amino acids
Browser: contig02:1621078-1624319-
Protein function
EGGNOG: | 0PHU2 | MTR4 | RNA helicase |
---|---|---|---|
SGD closest match: | S000003586 | MTR4 | ATP-dependent RNA helicase DOB1 |
CGD closest match: | CAL0000198236 | orf19.1335 | ATP-dependent RNA helicase |
Protein alignments
%id | Aln length | E-value | ||
---|---|---|---|---|
MCA_01250_1 | 73.897% | 1088 | 0.0 | MCA_01250_1 |
A0A0J9X6C1_GEOCN | 69.859% | 1065 | 0.0 | Similar to Saccharomyces cerevisiae YJL050W MTR4 ATP-dependent 3'-5' RNA helicase of the DExD/H family OS=Geotrichum candidum GN=BN980_GECA03s06247g PE=4 SV=1 |
A0A167CB28_9ASCO | 67.623% | 1081 | 0.0 | ATP-dependent RNA helicase MTR4 OS=Sugiyamaella lignohabitans GN=MTR4 PE=4 SV=1 |
A0A060T9Q5_BLAAD | 69.162% | 1002 | 0.0 | ARAD1D20438p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D20438g PE=4 SV=1 |
A0A1E3PRF8_9ASCO | 66.073% | 1067 | 0.0 | Antiviral helicase OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_68269 PE=4 SV=1 |
Q6C9C9_YARLI | 61.137% | 1073 | 0.0 | YALI0D12210p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D12210g PE=4 SV=1 |
MTR4_YEAST | 61.003% | 1077 | 0.0 | ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1 |
UniRef50_P47047 | 61.003% | 1077 | 0.0 | ATP-dependent RNA helicase DOB1 n=213 Tax=Eukaryota TaxID=2759 RepID=MTR4_YEAST |
A0A1E4T9N9_9ASCO | 58.148% | 1080 | 0.0 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_58742 PE=4 SV=1 |
A0A1D8PRD5_CANAL | 58.450% | 1071 | 0.0 | ATP-dependent RNA helicase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.1335 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0358
Protein family membership
- ATP-dependent RNA helicase Ski2 (IPR016438)
Domains and repeats
-
Domain
-
Domain
1
100
200
300
400
500
600
700
800
900
1000
1062
Detailed signature matches
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PIRSF005198 (SKI2)
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-
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PF00270 (DEAD)
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-
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SSF52540 (P-loop co...)
-
-
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PF13234 (rRNA_proc-...)
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no IPR
Unintegrated signatures
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-
cd00046 (DEXDc)
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cd00079 (HELICc)
-
mobidb-lite (disord...)
Residue annotation
-
ATP binding site c...
-
putative Mg++ bind...
-
nucleotide binding...
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ATP-binding site c...
Protein sequence
>MIA_01766_1 MDLFDVFDEDPSVPVLETTPQEPVAGEKRPNSPVPDDNAPASQADENETNNDSADKKLNKKIKKNKTSDEVKTVVTDSFE TEASREVIASAGLMAQEVAPNGDEQNVVLSHQVRHQVALPPDYEYIPISQHKIEHPARTYPFTLDPFQKVSINSIDRNES VLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIKALSNQKYRELLERFQDVGLMTGDVTINPDASCLVMTTEILRSML YKGSEVMREVAWVVFDEIHYMRDPERGVVWEETIILLPDKVHYVFLSATIPNAMQFAEWVCKTHNQPCHVVYTNFRPTPL QHYLFPAGGTGIHLVVDEKGNFREENFQKAMGSLGEKMGEDPASIDAKHKKGKIAKGGKQDLGDIYKIVRMIMQKNFNPV IVFSFSKRECESHALKLSKLNFNTDDEVEMIDKIFSNAMNSLSEEDRKLPQISHILPLLRRGIGIHHSGLLPILKEVIEI LFQEGYIKVLFATETFSIGLNMPAKTVVFTNVRKFDGKNFRWVSGGEYIQMSGRAGRRGLDDRGIVILMIDEQMEPAVAK GMVKGEADRLDSSFHLSYNMILNLLRVEGISPEFMLQRCFYQFQNHEHIPEYKKLFTEVEEKLAAIHIEDEEAIREYYDL REQIKLFSDDLRTVITLPTYIIPYLQPGRLLHVKINGTDFGWGAVVSFDRRNPPKNKKIELSPHESIIVEVLLWVTKASP TNLQRKKSPFLHPGITPSLDPNEGKMESLWITLDSIQKLSNLKIRIPKDISSPNQRKSIKRNIDEVSRRFPDGIPSPDPV ENMKIVDESFLKLVRKIEVLESRLHTNPLHKSPDLEEKFNQYSEKVALIQERKKIKAKLSDAYSILQLDELRCRKHVLRQ LEFTTQDDIVELKGRVACEISSGDELVITEMIFNGSFSNLTPEQCASLLSCFVFDEKTRESPVLSPELKIPYDSLCEITK RVAQISKQCKININVDDYQAKFKMELMDVVYHWCKGATFAQICRMTDVYEGSLVRLFRRLEELILQVGEAAKIMGNTDIQ DKMTKALSLIKRDMISATSLYL
GO term prediction
Biological Process
GO:0006401 RNA catabolic process
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003724 RNA helicase activity
GO:0005524 ATP binding
Cellular Component
None predicted.