Protein

MIA_01724_1

Length
177 amino acids

Browser: contig02:1507794-1508453-

Protein function

EGGNOG:0PP7TRPB4polymerase II
SGD closest match:S000003676RPB4DNA-directed RNA polymerase II subunit RPB4
CGD closest match:CAL0000176099RPB4DNA-directed RNA polymerase II subunit

Protein alignments

%idAln lengthE-value
MCA_00575_172.826%1841.53e-81MCA_00575_1
A0A060TC49_BLAAD70.556%1802.55e-76ARAD1D36894p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D36894g PE=4 SV=1
A0A0J9XKL9_GEOCN69.492%1774.95e-75Similar to Saccharomyces cerevisiae YJL140W RPB4 RNA polymerase II subunit B32 OS=Geotrichum candidum GN=BN980_GECA32s00263g PE=4 SV=1
A0A1E3PP84_9ASCO57.377%1835.52e-64Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_46115 PE=4 SV=1
UniRef50_A0A1E3NWP753.409%1761.87e-51Uncharacterized protein n=1 Tax=Wickerhamomyces anomalus NRRL Y-366-8 TaxID=683960 RepID=A0A1E3NWP7_WICAO
A0A1E4TF55_9ASCO51.136%1762.81e-54Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_13541 PE=4 SV=1
Q6CC37_YARLI54.386%1718.50e-52YALI0C12793p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C12793g PE=4 SV=1
A0A167CAK4_9ASCO68.493%731.10e-29DNA-directed RNA polymerase II subunit RPB4 OS=Sugiyamaella lignohabitans GN=RPB4 PE=4 SV=1
RPB4_YEAST62.500%801.70e-25DNA-directed RNA polymerase II subunit RPB4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB4 PE=1 SV=1
A0A1D8PH80_CANAL49.398%837.63e-20DNA-directed RNA polymerase II subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPB4 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0407

Protein family membership

Domains and repeats

  1. Domain
  2. Domain
1 20 40 60 80 100 120 140 160 177

Detailed signature matches

  1. Family IPR005574
    RNA polymerase II, Rpb4
    1. PF03874 (RNA_pol_Rpb4)
  2. Domain IPR006590
    RNA polymerase II, Rpb4, core
    1. SM00657 (rpol4neu2)
  3. Domain IPR010997
    HRDC-like
    1. SSF47819 (HRDC-like)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:1.10.15...
  2. mobidb-lite (disord...)

Protein sequence

>MIA_01724_1
MNVSTSTIEQPRRKPNQSITDSEDASILELGPEFDVNQIGHDGNVTKLITLNLSETRILINAVLKQRRKEESGKHFDESD
INDNEDEEDFSNSNEVLRKTQEYLSIFARFRNEETVKAVENLLNSAENADLHPFEVAQLGSLACEEADEAKTLIPSLAKK
KTDDELQLILSQLNKLG

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated
GO:0044237 cellular metabolic process

Molecular Function

GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0003899 DNA-directed 5'-3' RNA polymerase activity

Cellular Component

None predicted.