Protein

MCA_00575_1

Length
184 amino acids

Gene name: RPB4

Description: DNA-directed RNA polymerase II subunit RPB4

Browser: contigA:1771953-1772676-

RNA-seq: read pairs 1373, FPKM 91.7, percentile rank 77.2% (100% = highest expression)

Protein function

Annotation:RPB4DNA-directed RNA polymerase II subunit RPB4
KEGG:K03012RPB4 DNA-directed RNA polymerase II subunit RPB4
EGGNOG:0PP7TRPB4polymerase II
SGD closest match:S000003676RPB4DNA-directed RNA polymerase II subunit RPB4
CGD closest match:CAL0000176099RPB4DNA-directed RNA polymerase II subunit

Protein alignments

%idAln lengthE-value
MIA_01724_174.46%1844e-90MIA_01724_1
A0A060TC49_BLAAD69.57%1844e-83ARAD1D36894p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D36894g PE=4 SV=1
A0A0J9XKL9_GEOCN69.02%1842e-82Similar to Saccharomyces cerevisiae YJL140W RPB4 RNA polymerase II subunit B32 OS=Geotrichum candidum GN=BN980_GECA32s00263g PE=4 SV=1
A0A1E3PP84_9ASCO59.78%1847e-69Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_46115 PE=4 SV=1
A0A1E4TF55_9ASCO53.55%1837e-61Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_13541 PE=4 SV=1
UniRef50_A0A1E3NWP750.82%1832e-52Uncharacterized protein n=1 Tax=Wickerhamomyces anomalus NRRL Y-366-8 TaxID=683960 RepID=A0A1E3NWP7_WICAO
Q6CC37_YARLI50.84%1794e-54YALI0C12793p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C12793g PE=4 SV=1
RPB4_YEAST41.89%2224e-40DNA-directed RNA polymerase II subunit RPB4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB4 PE=1 SV=1
A0A167CAK4_9ASCO69.14%811e-30DNA-directed RNA polymerase II subunit RPB4 OS=Sugiyamaella lignohabitans GN=RPB4 PE=4 SV=1
A0A1D8PH80_CANAL51.14%885e-22DNA-directed RNA polymerase II subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPB4 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.2369
Predicted cleavage: 14

Protein family membership

Domains and repeats

  1. Domain
  2. Domain
1 20 40 60 80 100 120 140 160 184

Detailed signature matches

  1. Family IPR005574
    RNA polymerase II, Rpb4
    1. PF03874 (RNA_pol_Rpb4)
  2. Domain IPR006590
    RNA polymerase II, Rpb4, core
    1. SM00657 (rpol4neu2)
  3. Domain IPR010997
    HRDC-like
    1. SSF47819 (HRDC-like)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:1.10.15...
  2. mobidb-lite (disord...)

Protein sequence

>MCA_00575_1
MNISTSTIPRRRRKPNQSITDEEDASILKLGPEFDLHQINHDGKDSTLITLNLSETRLLINAALKQRRQEEAGMSGANRK
GEDERNDDDGKYEEEDFSNSNEVLRKTQEYLSIFARFRDEQTVTAVEGLLKSPENQDLHPFEVAQLGSLTCEEAEEAKTL
IPSLANKKTDEELQLVLDQLNKFG

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated
GO:0044237 cellular metabolic process

Molecular Function

GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0003899 DNA-directed 5'-3' RNA polymerase activity

Cellular Component

None predicted.