Protein
MIA_01663_1
Length
127 amino acids
Browser: contig02:1334926-1335380+
Protein function
| EGGNOG: | 0PQUF | FG00358.1 | Small nuclear ribonucleoprotein |
|---|---|---|---|
| SGD closest match: | S000003306 | SMD1 | Small nuclear ribonucleoprotein Sm D1 |
| CGD closest match: | CAL0000185982 | CAALFM_CR10820WA | mRNA splicing protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_04457_1 | 92.857% | 84 | 2.16e-40 | MCA_04457_1 |
| A0A167CK75_9ASCO | 83.333% | 84 | 4.11e-37 | Smd1p OS=Sugiyamaella lignohabitans GN=SMD1 PE=4 SV=1 |
| A0A060THE7_BLAAD | 82.716% | 81 | 1.95e-36 | ARAD1D30316p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D30316g PE=4 SV=1 |
| A0A0J9X2W2_GEOCN | 85.185% | 81 | 5.73e-35 | Similar to Saccharomyces cerevisiae YGR074W SMD1 Core Sm protein Sm D1 OS=Geotrichum candidum GN=BN980_GECA01s11065g PE=4 SV=1 |
| UniRef50_A0A0J9X2W2 | 85.185% | 81 | 1.17e-31 | Similar to Saccharomyces cerevisiae YGR074W SMD1 Core Sm protein Sm D1 n=2 Tax=saccharomyceta TaxID=716545 RepID=A0A0J9X2W2_GEOCN |
| A0A1E3PN47_9ASCO | 80.303% | 66 | 1.96e-34 | Sm-like ribonucleo protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_46038 PE=4 SV=1 |
| Q6CHU2_YARLI | 75.758% | 66 | 6.67e-31 | YALI0A04961p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A04961g PE=4 SV=1 |
| A0A1E4TIL7_9ASCO | 68.182% | 66 | 7.05e-31 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_122 PE=4 SV=1 |
| A0A1D8PUC1_CANAL | 47.619% | 84 | 3.08e-19 | mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR10820WA PE=4 SV=1 |
| SMD1_YEAST | 45.652% | 92 | 1.12e-15 | Small nuclear ribonucleoprotein Sm D1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMD1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0332
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
20
40
60
80
100
127
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Residue annotation
-
Sm1 motif cd01724
-
heptamer interface...
-
RNA binding site c...
-
Sm2 motif cd01724
Protein sequence
>MIA_01663_1 MKLTNESVQIELKNGTIVSGTILSVSPNMNTTLRGVKMTIRNREPISLEYINIRGNTIRHFILPESLPLDTLLIDDTPKP KAGSGAGNVRQKATRGRGGGRGGRGGRGGRGGGGGGGRGRGQSSRGF
GO term prediction
Biological Process
GO:0000387 spliceosomal snRNP assembly
Molecular Function
None predicted.
Cellular Component
None predicted.