Protein
MCA_04457_1
Length
127 amino acids
Browser: contigC:3104506-3105144-
RNA-seq: read pairs 815, FPKM 78.7, percentile rank 75.0% (100% = highest expression)
Protein function
| KEGG: | K11087 | SNRPD1 | small nuclear ribonucleoprotein D1 |
|---|---|---|---|
| EGGNOG: | 0PQUF | FG00358.1 | Small nuclear ribonucleoprotein |
| SGD closest match: | S000003306 | SMD1 | Small nuclear ribonucleoprotein Sm D1 |
| CGD closest match: | CAL0000185982 | CAALFM_CR10820WA | mRNA splicing protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A060THE7_BLAAD | 86.30% | 73 | 5e-41 | ARAD1D30316p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D30316g PE=4 SV=1 |
| MIA_01663_1 | 93.94% | 66 | 9e-38 | MIA_01663_1 |
| A0A1E3PN47_9ASCO | 83.33% | 66 | 2e-34 | Sm-like ribonucleo protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_46038 PE=4 SV=1 |
| A0A167CK75_9ASCO | 80.30% | 66 | 7e-35 | Smd1p OS=Sugiyamaella lignohabitans GN=SMD1 PE=4 SV=1 |
| A0A0J9X2W2_GEOCN | 83.33% | 66 | 9e-34 | Similar to Saccharomyces cerevisiae YGR074W SMD1 Core Sm protein Sm D1 OS=Geotrichum candidum GN=BN980_GECA01s11065g PE=4 SV=1 |
| UniRef50_A0A0J9X2W2 | 83.33% | 66 | 2e-30 | Similar to Saccharomyces cerevisiae YGR074W SMD1 Core Sm protein Sm D1 n=2 Tax=saccharomyceta TaxID=716545 RepID=A0A0J9X2W2_GEOCN |
| Q6CHU2_YARLI | 75.34% | 73 | 1e-33 | YALI0A04961p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A04961g PE=4 SV=1 |
| A0A1E4TIL7_9ASCO | 71.21% | 66 | 3e-30 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_122 PE=4 SV=1 |
| A0A1D8PUC1_CANAL | 53.33% | 75 | 1e-20 | mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR10820WA PE=4 SV=1 |
| SMD1_YEAST | 45.00% | 100 | 2e-16 | Small nuclear ribonucleoprotein Sm D1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMD1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.2875
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
20
40
60
80
100
127
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Residue annotation
-
heptamer interface...
-
RNA binding site c...
-
Sm1 motif cd01724
-
Sm2 motif cd01724
Protein sequence
>MCA_04457_1 MQLVRFLMKLTNESVQIELKNGTIISGTILSVSPNMNTTLRGVKMTIRNRDPISLEYINIRGNNIRYFILPESLPLDTLL IDDTPKAKGGSKPKPAASARGRGGSMRGGRGGRGGRGGRGGRPSRGF
GO term prediction
Biological Process
GO:0000387 spliceosomal snRNP assembly
Molecular Function
None predicted.
Cellular Component
None predicted.