Protein
MIA_01613_1
Length
184 amino acids
Browser: contig02:1199673-1200464+
Protein function
| EGGNOG: | 0PRH8 | LSM7 | U6 snRNA-associated Sm-like protein LSm7 |
|---|---|---|---|
| SGD closest match: | S000005091 | LSM7 | U6 snRNA-associated Sm-like protein LSm7 |
| CGD closest match: | CAL0000192216 | orf19.2639.1 | Sm-like protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_03275_1 | 60.952% | 105 | 1.34e-31 | MCA_03275_1 |
| UniRef50_A0A0D1CTK2 | 51.376% | 109 | 1.14e-27 | Chromosome 5, whole genome shotgun sequence n=38 Tax=Fungi TaxID=4751 RepID=A0A0D1CTK2_USTMA |
| A0A060T3M6_BLAAD | 52.475% | 101 | 7.08e-31 | ARAD1C35002p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C35002g PE=4 SV=1 |
| A0A0J9X9M2_GEOCN | 52.427% | 103 | 3.99e-30 | Similar to Saccharomyces cerevisiae YNL147W LSM7 Lsm (Like Sm) protein OS=Geotrichum candidum GN=BN980_GECA05s02749g PE=4 SV=1 |
| A0A1D8PNP9_CANAL | 51.020% | 98 | 8.04e-28 | Sm-like protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2639.1 PE=4 SV=1 |
| A0A1E3PCV4_9ASCO | 43.860% | 114 | 1.43e-26 | Uncharacterized protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_28902 PE=4 SV=1 |
| LSM7_YEAST | 47.059% | 102 | 2.74e-24 | U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1 SV=2 |
| A0A1E4TD73_9ASCO | 44.898% | 98 | 1.91e-20 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_18456 PE=4 SV=1 |
| B5RSM6_YARLI | 42.222% | 90 | 1.85e-16 | YALI0F30426p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F30426g PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1745
Predicted cleavage: 21
Protein family membership
- Sm-like protein Lsm7 (IPR017132)
Domains and repeats
-
Domain
1
20
40
60
80
100
120
140
160
184
Detailed signature matches
no IPR
Unintegrated signatures
-
-
PIRSF037188 (Lsm7)
-
mobidb-lite (disord...)
Residue annotation
-
hexamer interface ...
-
Sm1 motif cd01729
-
putative RNA bindi...
-
Sm2 motif cd01729
Protein sequence
>MIA_01613_1 MENQNRQFSNNYNQNYQNRGGSNNRQYNNNNNNNYNNNNRGNYQRRNYGNNYHNANTAGSSEKQERTPRPGEDRPKKEAI IDLAQYFNKKVEVKIMGRREVVGILKGYDQLMNLVLDDTVETVFLEEPTTTAKPRVRNLGRVVVRSTMLYEINPAEGVTS IDSPFTEVVPGVSVPTGPGSSVSA
GO term prediction
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0000956 nuclear-transcribed mRNA catabolic process
Molecular Function
None predicted.
Cellular Component
None predicted.