Protein
MCA_03275_1
Length
161 amino acids
Gene name: LSM7
Description: U6 snRNA-associated Sm-like protein LSm7
Browser: contigB:3886680-3887390-
RNA-seq: read pairs 2635, FPKM 201.0, percentile rank 88.1% (100% = highest expression)
Protein function
| Annotation: | LSM7 | U6 snRNA-associated Sm-like protein LSm7 | |
|---|---|---|---|
| KEGG: | K12626 | LSM7 | U6 snRNA-associated Sm-like protein LSm7 |
| EGGNOG: | 0PRH8 | LSM7 | U6 snRNA-associated Sm-like protein LSm7 |
| SGD closest match: | S000005091 | LSM7 | U6 snRNA-associated Sm-like protein LSm7 |
| CGD closest match: | CAL0000192216 | orf19.2639.1 | Sm-like protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01613_1 | 60.95% | 105 | 9e-24 | MIA_01613_1 |
| UniRef50_A0A081CBI5 | 53.40% | 103 | 2e-17 | U6 snRNA-associated Sm-like protein LSm7 n=124 Tax=Fungi TaxID=4751 RepID=A0A081CBI5_PSEA2 |
| A0A0J9X9M2_GEOCN | 54.21% | 107 | 1e-18 | Similar to Saccharomyces cerevisiae YNL147W LSM7 Lsm (Like Sm) protein OS=Geotrichum candidum GN=BN980_GECA05s02749g PE=4 SV=1 |
| A0A060T3M6_BLAAD | 52.48% | 101 | 7e-19 | ARAD1C35002p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C35002g PE=4 SV=1 |
| A0A1D8PNP9_CANAL | 51.55% | 97 | 4e-18 | Sm-like protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2639.1 PE=4 SV=1 |
| A0A1E3PCV4_9ASCO | 47.62% | 105 | 2e-13 | Uncharacterized protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_28902 PE=4 SV=1 |
| A0A1E4TD73_9ASCO | 47.42% | 97 | 7e-12 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_18456 PE=4 SV=1 |
| LSM7_YEAST | 44.44% | 99 | 2e-08 | U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1 SV=2 |
| B5RSM6_YARLI | 44.57% | 92 | 4e-06 | YALI0F30426p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F30426g PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0152
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
20
40
60
80
100
120
140
161
Detailed signature matches
-
-
SSF50182 (Sm-like r...)
-
no IPR
Unintegrated signatures
-
-
PIRSF037188 (Lsm7)
-
mobidb-lite (disord...)
Protein sequence
>MCA_03275_1 MEGQNQGGNNRQYNNNNNRQHYNNNNRGNYQNRRYHNNNNNNNNNERYEKQSRPGEERPKKEPILDLSKYLNQKVEVQFA GKRTIVGVLKGYDLLLNLVLDDTVETVSHYESSDKPAVEKTRNLGRVIARGTSLYGINPAEGVTIISNPFENQQQEQPTT V
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.