Protein

MIA_01480_1

Length
1,455 amino acids


Browser: contig02:837890-842311-

Protein function

EGGNOG:0PH1PFG09860.1DNA-directed RNA Polymerase
SGD closest match:S000005642RPO31DNA-directed RNA polymerase III subunit RPC1
CGD closest match:CAL0000190107orf19.3103DNA-directed RNA polymerase subunit

Protein alignments

%idAln lengthE-value
MCA_00854_184.959%14560.0MCA_00854_1
A0A0J9XK76_GEOCN77.510%14540.0DNA-directed RNA polymerase subunit OS=Geotrichum candidum GN=BN980_GECA25s01066g PE=3 SV=1
A0A1E3PI43_9ASCO71.162%14460.0DNA-directed RNA polymerase subunit OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_70621 PE=3 SV=1
A0A060T0M0_BLAAD71.899%14270.0DNA-directed RNA polymerase subunit OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C14146g PE=3 SV=1
RPC1_YEAST68.301%14480.0DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1 SV=1
UniRef50_P0405168.301%14480.0DNA-directed RNA polymerase III subunit RPC1 n=159 Tax=Eukaryota TaxID=2759 RepID=RPC1_YEAST
A0A1D8PMS1_CANAL67.076%14670.0DNA-directed RNA polymerase subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.3103 PE=3 SV=1
Q6CB20_YARLI66.079%14740.0DNA-directed RNA polymerase subunit OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C22550g PE=3 SV=1
A0A167D8H8_9ASCO73.150%13110.0DNA-directed RNA polymerase subunit OS=Sugiyamaella lignohabitans GN=RPO31 PE=3 SV=1
A0A1E4TH45_9ASCO61.126%14560.0DNA-directed RNA polymerase subunit OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_57439 PE=3 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1278

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Domain
1 200 400 600 800 1000 1200 1455

Detailed signature matches

    1. PF04997 (RNA_pol_Rp...)
    1. cd02583 (RNAP_III_R...)
    1. SM00663 (rpolaneu7)
    1. PF00623 (RNA_pol_Rp...)
    1. PF04983 (RNA_pol_Rp...)
    1. PF05000 (RNA_pol_Rp...)
    1. PF04998 (RNA_pol_Rp...)
    1. cd02736 (RNAP_III_R...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. SSF64484 (beta and ...)

Residue annotation

  1. Zn-binding cd02583
  2. putative active si...
  3. catalytic site cd0...
  4. Rpb1 (Rpc1) - Rpb6...
  5. cleft cd02736
  6. Rpb1 (Rpc1) - Rpb2...
  7. DNA binding site c...
  8. Rpb1 (Rpc1) - Rpb5...
  9. clamp cd02736

Protein sequence

>MIA_01480_1
MKEVVINDPPRRIAGLEFSALSPQDILRQSEIEVSSRNLYDISKGRTPHEHGPLDARLGVSSNFQECSTCHGKLANCQGH
FGLIKLALPCFHVGYFKSVISILQSICKDCSAILIDETTRRKYLNELRRPGIDNLRRMQILKKVIEQSKKQRRCLKCNSI
NGVVKKVGALRMIHDKFRWVSKKGSEEKSDFEASFDEVKKVSPEVEKYSKRAMDDLNPLKVLHLFEKILPADCELLGMDS
TKGRPETFLWRYVPAPPVCIRPSVQQDGASNEDDLTTQLAEIAFTNSIIRAGLDSGMTIGNLMRHWDYLQYSIALYINGD
MPSWPGMQVKSVRGLCQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLNIGQVAVPDRVAKILTYPERVTEYNMDKMRT
LVSNGSLNYPGANYVIKKNEEMKRSLRYGRLADIAANLAIGDVVERHLEDDDVVLFNRQPSLHRLSILAHKAKIKPWRTF
RLNECTCTPFGADFDGDEMNLHVPQTEEARTEALNLMGVKYNLITPKSGEPIIAATQDFITASYLISKKDSFFDRASFTE
MCAMMSDADIHFDIPPPAIVKPVKLWTGKQLFSLLIRPNKQSNVIINLDAKNKTFVPPAKGQPNEMSPNDGYLVIRGSQI
LAGHMDKSTLGDGKKAQVFYTILRDYGPDEAVGAMNRMAKLCARFLGNRGFSIGINDVTPGKELNKEKDRLIEIAYKKCD
DLIELLKEGKLETQPGCNEEQTLEAKIGGILSKVREEVGDVCINELEKSNAPLIMASCGSKGSTVNVSQMVAAVGQQIIA
GSRVPNGFQDRTLPHFPKFSKTPPSKGFVRNSFFSGLNPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCK
YDSTVRTSSNSIIQFQYGGDGLDPFEMEGDAKPVNFARTWMHCNNVTFNLADSGLLPYQVVELATSIITPLKKRLSRRDN
LGRLVSGTKDEDNINYTDEYDPQREFYDSVLDYIKSKAKELGEVRKRRNMQPLYNAPFGEYANIDFDEFVESHKRKTVDQ
LCKISEKCVREFLGQCLKRYERSKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKVIST
PIITAYLVNDEDERAARVVKGRIEKTYLSDVIRYIDDVYESHRAYIRVKIDWKTIERLQLELSIDDICKAITKAPKLKLT
SADVTSNSPDVINVAIREISTTSAAAKAKALAWTVASSTSMVGTDSETFFRAQLLRRALPDVAVKGYPEISRAVINIREK
DNKTELLVEGYGLKHVMTVDGVIGKKTVTNHVLEMYQVLGIEAARTSIVDEINYTMGSHGMSVDPRHIQLLGDMMTFKGE
VLGITRFGLSKMRDSVLQLASFEKTTDHLFDAGFYMKTDKIEGVSECIILGQSMSLGTGSFNLVYPTEIQFEEEKYIGDR
LVLGKQDSLYESLWS

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated

Molecular Function

GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity

Cellular Component

None predicted.