Protein

MCA_00854_1

Length
1,458 amino acids


Gene name: RPO31

Description: DNA-directed RNA polymerase III subunit RPC1

Browser: contigA:2673773-2678293-

RNA-seq: read pairs 1586, FPKM 13.4, percentile rank 31.6% (100% = highest expression)

Protein function

Annotation:RPO31DNA-directed RNA polymerase III subunit RPC1
KEGG:K03018RPC1 DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
EGGNOG:0PH1PFG09860.1DNA-directed RNA Polymerase
SGD closest match:S000005642RPO31DNA-directed RNA polymerase III subunit RPC1
CGD closest match:CAL0000190107orf19.3103DNA-directed RNA polymerase subunit

Protein alignments

%idAln lengthE-value
MIA_01480_184.96%14560.0MIA_01480_1
A0A0J9XK76_GEOCN78.37%14560.0DNA-directed RNA polymerase subunit OS=Geotrichum candidum GN=BN980_GECA25s01066g PE=3 SV=1
A0A1E3PI43_9ASCO72.49%14320.0DNA-directed RNA polymerase subunit OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_70621 PE=3 SV=1
A0A060T0M0_BLAAD72.06%14280.0DNA-directed RNA polymerase subunit OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C14146g PE=3 SV=1
RPC1_YEAST67.63%14520.0DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1 SV=1
UniRef50_P0405167.63%14520.0DNA-directed RNA polymerase III subunit RPC1 n=159 Tax=Eukaryota TaxID=2759 RepID=RPC1_YEAST
A0A167D8H8_9ASCO73.05%13210.0DNA-directed RNA polymerase subunit OS=Sugiyamaella lignohabitans GN=RPO31 PE=3 SV=1
A0A1D8PMS1_CANAL66.21%14710.0DNA-directed RNA polymerase subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.3103 PE=3 SV=1
Q6CB20_YARLI65.95%14800.0DNA-directed RNA polymerase subunit OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C22550g PE=3 SV=1
A0A1E4TH45_9ASCO60.30%14610.0DNA-directed RNA polymerase subunit OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_57439 PE=3 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.2196

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Domain
1 200 400 600 800 1000 1200 1458

Detailed signature matches

    1. PF04997 (RNA_pol_Rp...)
    1. cd02583 (RNAP_III_R...)
    1. SM00663 (rpolaneu7)
    1. PF00623 (RNA_pol_Rp...)
    1. PF04983 (RNA_pol_Rp...)
    1. PF05000 (RNA_pol_Rp...)
    1. PF04998 (RNA_pol_Rp...)
    1. cd02736 (RNAP_III_R...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. SSF64484 (beta and ...)

Residue annotation

  1. Zn-binding cd02583
  2. putative active si...
  3. catalytic site cd0...
  4. Rpb1 (Rpc1) - Rpb6...
  5. cleft cd02736
  6. Rpb1 (Rpc1) - Rpb2...
  7. DNA binding site c...
  8. Rpb1 (Rpc1) - Rpb5...
  9. clamp cd02736

Protein sequence

>MCA_00854_1
MKEVVVDDPPRRIQGLDFCALSPQDMLRQSEIEVSTKTFYDMDKGRVPMEHGPLDTRMGVSSNFSECTTCHGRLANCQGH
FGLVKLALPAFHVGYFKAVISILQNVCKDCSALLIDEPTKRKFLAELRRPGIDNLKRMQILKKVNTQAKKQRHCLKCNAI
NGVVKKVGALRMIHDKFRWVGKKMTSEKSDFEQSFNEVKKISPEIEKFYKRAMDDLNPLKVLQIFEKISPADCELLGMNS
TQGRPEMYLWRYVPAPPVCIRPSVQQDGASNEDDLTTQLAEIVFTNAIIRAGLESGMAISQLMQHWDYLQYSIALYINGD
MPSWPGMQVKSVRGLCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIGQVAVPDRVAKILTYPEQVTSYNINKMRE
LVANGALKYPGANFIIKKDEEMKRNLRYGRLKELAANLQIGDIVERHLEDDDVVLFNRQPSLHRLSILAHKAKIMPWRTF
RLNECTCTPFGADFDGDEMNLHVPQTEEARTEALLLMGVKYNLITPKSGEPIIGATQDFITASYLISRKDSFFDRASFSE
MCAMMSDGDMHFDIPPPAIVKPVKLWTGKQLYSLLIKPNKQSNVVINLDAKNKTFVPPEKGLPSEMSPNDGYLLIRGSKV
LAGHMDKSTLGDGKKQNVFYTILRDYGPDEAVGAMNRMAKLCARFLGNRGFSIGINDVTPGKHLNHQKDKLIEVAYKKCD
DLIEMLKEGKLETQPGCNEEQTLEAKIGGILSKVREEVGEVCINELEKSNAPLIMASCGSKGSTVNVSQMVAAVGQQIIA
GNRVPNGFQDRTLPHFPKFSKTPPSKGFVRNSFYSGLNPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSK
YDSTVRTSSNSIVQFQYGGDGLDPFEMEGDAKPVNFVRTWIHSMDITYSHEDKCLLPYQIVELATSVITPLKTRLARRDN
LGNIIQGTDKENLDIYTDEYDPQRAFYDSVLDYIKSKAKELSEVRKRKNMQPLLTPPPSNGKYSEIDFDMFVDESKKKFV
SQVCKISERGVREFLRQCLKRYERSKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVI
STPIITANLVNDHDERAARVVKGRIEKTYLSDVVKYIDDVYEAHRAYIRVKIDWKAIAKLQLELTLDDICKAIIKAPKLK
LTTTDVCANGNDIITVNVKDIATLSTNAKAKALSWSIASTSNIGGSESEVYFRAQILRRALPDVAVKGFPEISRAVINIR
EKDEKTELLVEGYGLKHVMTVDGVVGTTTVTNHVLEMYSVLGIEAARTSIVDEINYTMGSHGMSVDPRHIQLLGDMMTFK
GEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYTKTDKIEGVSECIILGQCMSIGTGAFNLVYPTQITDVTEQYVG
DRLVLGKREPLFESLWGN

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated

Molecular Function

GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity

Cellular Component

None predicted.