Protein

MIA_01459_1

Length
98 amino acids


Browser: contig02:790484-790925-

Protein function

EGGNOG:0PQU6LSM3U6 snRNA-associated Sm-like protein LSm3
SGD closest match:S000006434LSM3U6 snRNA-associated Sm-like protein LSm3
CGD closest match:CAL0000188432SMX4U4/U6-U5 snRNP complex subunit

Protein alignments

%idAln lengthE-value
MCA_00401_181.61%876e-49MCA_00401_1
A0A0J9XD34_GEOCN72.34%941e-43Similar to Saccharomyces cerevisiae YLR438C-A LSM3 Lsm (Like Sm) protein OS=Geotrichum candidum GN=BN980_GECA08s03838g PE=4 SV=1
A0A060SZR1_BLAAD68.97%871e-38ARAD1C02640p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C02640g PE=4 SV=1
UniRef50_C8VRD464.44%901e-31U6 small nuclear ribonucleoprotein (Lsm3), putative (AFU_orthologue AFUA_5G12570) n=114 Tax=Eukaryota TaxID=2759 RepID=C8VRD4_EMENI
A0A1E3PFH8_9ASCO52.17%922e-28Sm-like ribonucleo protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_84314 PE=4 SV=1
Q6CF19_YARLI55.68%883e-27YALI0B11022p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B11022g PE=4 SV=1
A0A1D8PTG5_CANAL60.49%818e-26U4/U6-U5 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SMX4 PE=4 SV=1
LSM3_YEAST48.10%795e-21U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1 SV=1
A0A1E4TBH8_9ASCO52.11%712e-19Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_32469 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0251

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 10 20 30 40 50 60 70 80 90 98

Detailed signature matches

    1. SSF50182 (Sm-like r...)
    1. PF01423 (LSM)
    2. SM00651 (Sm3)
    1. cd01730 (LSm3)
Unintegrated signatures no IPR
Unintegrated signatures

Residue annotation

  1. putative oligomer ...
  2. Sm1 motif cd01730
  3. putative RNA bindi...
  4. Sm2 motif cd01730

Protein sequence

>MIA_01459_1
MSTLSTQPEPSTTTVSEPFDLVRLSLDEIVTVKLRVGRVLKGRLHAYDSHCNLIMSNVEETITYFEDGDEEPKSIKKHSE
MMFVRGDSVILISPPTRR

GO term prediction

Biological Process

GO:0000398 mRNA splicing, via spliceosome
GO:0000956 nuclear-transcribed mRNA catabolic process

Molecular Function

None predicted.

Cellular Component

None predicted.