Protein
MCA_00401_1
Length
91 amino acids
Gene name: LSM3
Description: U6 snRNA-associated Sm-like protein LSm3
Browser: contigA:1262715-1263148-
RNA-seq: read pairs 936, FPKM 125.7, percentile rank 82.5% (100% = highest expression)
Protein function
| Annotation: | LSM3 | U6 snRNA-associated Sm-like protein LSm3 | |
|---|---|---|---|
| KEGG: | K12622 | LSM3 | U6 snRNA-associated Sm-like protein LSm3 |
| EGGNOG: | 0PQU6 | LSM3 | U6 snRNA-associated Sm-like protein LSm3 |
| SGD closest match: | S000006434 | LSM3 | U6 snRNA-associated Sm-like protein LSm3 |
| CGD closest match: | CAL0000188432 | SMX4 | U4/U6-U5 snRNP complex subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01459_1 | 81.61% | 87 | 6e-49 | MIA_01459_1 |
| A0A0J9XD34_GEOCN | 71.26% | 87 | 2e-41 | Similar to Saccharomyces cerevisiae YLR438C-A LSM3 Lsm (Like Sm) protein OS=Geotrichum candidum GN=BN980_GECA08s03838g PE=4 SV=1 |
| A0A060SZR1_BLAAD | 67.44% | 86 | 1e-37 | ARAD1C02640p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C02640g PE=4 SV=1 |
| UniRef50_C8VRD4 | 62.77% | 94 | 3e-30 | U6 small nuclear ribonucleoprotein (Lsm3), putative (AFU_orthologue AFUA_5G12570) n=114 Tax=Eukaryota TaxID=2759 RepID=C8VRD4_EMENI |
| A0A1E3PFH8_9ASCO | 54.35% | 92 | 5e-30 | Sm-like ribonucleo protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_84314 PE=4 SV=1 |
| Q6CF19_YARLI | 53.26% | 92 | 2e-25 | YALI0B11022p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B11022g PE=4 SV=1 |
| A0A1D8PTG5_CANAL | 57.83% | 83 | 9e-25 | U4/U6-U5 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SMX4 PE=4 SV=1 |
| LSM3_YEAST | 49.38% | 81 | 2e-21 | U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1 SV=1 |
| A0A1E4TBH8_9ASCO | 50.70% | 71 | 1e-18 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_32469 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0294
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
10
20
30
40
50
60
70
80
91
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
-
putative oligomer ...
-
Sm1 motif cd01730
-
putative RNA bindi...
-
Sm2 motif cd01730
Protein sequence
>MCA_00401_1 MDTSGSSIAEPLDLVKLSLDEIVTVKLRVGRILKGRLHAYDTHCNLIMSDVEETITYFEDEVEEPKVVTKHSEMMFVRGD SVILISPPTKE
GO term prediction
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0000956 nuclear-transcribed mRNA catabolic process
Molecular Function
None predicted.
Cellular Component
None predicted.