Protein
MIA_01173_1
Length
377 amino acids
Browser: contig01:3338576-3339754-
Protein function
| EGGNOG: | 0PKD6 | FG07289.1 | conserved hypothetical protein |
|---|---|---|---|
| SGD closest match: | S000000483 | PAF1 | RNA polymerase II-associated protein 1 |
| CGD closest match: | CAL0000196860 | orf19.3613 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_04471_1 | 64.416% | 385 | 2.64e-124 | MCA_04471_1 |
| A0A0J9XDB3_GEOCN | 61.316% | 380 | 5.41e-114 | Similar to saccharomyces cerevisiae YBR279W PAF1 Component of the Paf1p complex involved in transcription elongation OS=Geotrichum candidum GN=BN980_GECA11s02419g PE=4 SV=1 |
| Q6C509_YARLI | 42.969% | 384 | 5.97e-72 | YALI0E22022p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E22022g PE=4 SV=1 |
| UniRef50_Q6C509 | 42.969% | 384 | 1.38e-68 | YALI0E22022p n=2 Tax=Yarrowia lipolytica TaxID=4952 RepID=Q6C509_YARLI |
| A0A167CNC6_9ASCO | 45.195% | 385 | 6.26e-61 | Paf1p OS=Sugiyamaella lignohabitans GN=PAF1 PE=4 SV=1 |
| A0A060TFD5_BLAAD | 45.213% | 376 | 4.90e-59 | ARAD1D22286p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D22286g PE=4 SV=1 |
| A0A1E3PQE8_9ASCO | 37.789% | 389 | 1.94e-55 | RNA polymerase II-associated OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_81977 PE=4 SV=1 |
| A0A1E4TEY0_9ASCO | 32.552% | 384 | 2.62e-30 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_56867 PE=4 SV=1 |
| PAF1_YEAST | 30.597% | 268 | 8.70e-26 | RNA polymerase II-associated protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAF1 PE=1 SV=1 |
| Q59Y36_CANAL | 28.369% | 282 | 6.49e-24 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.3613 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1245
Protein family membership
- RNA polymerase II associated factor Paf1 (IPR007133)
Domains and repeats
None predicted.
Detailed signature matches
no IPR
Unintegrated signatures
-
mobidb-lite (disord...)
Protein sequence
>MIA_01173_1 MANSKRQDYIARVRYVNDLPPPPCPPKLLDVPINIQKLTSWAFLSDLVRKQIPNMDLDMDLGMPLDMTIVPGIFDREDES APGCYPLDPLPPLDPKDTVLLKDPTGGSSGSRGQPNVSFLRRTEYISSEVVRQKVDKSVNKKVSLTVVDPEAQLRAVEDT FEICNRSFETVRHPKNKALKPVESFSLFPDFKQLDLTYLSVKMVNSASLSHLREKQPDICLSTSLFRPTSLETDEWMSFF VPNESDARDLKRKLDDPSDHLERSNSEHDFENENEQTIYKFKHLRDYEMELIQHTNQFDDISVNFSSNSTKQGSGVAYFV PIAGRTNLKRRRVADSQKQVVAENNVAEIELSLRELDSEESIGRDRLRAEFDSILYG
GO term prediction
Biological Process
GO:0006368 transcription elongation from RNA polymerase II promoter
GO:0016570 histone modification
Molecular Function
None predicted.
Cellular Component
GO:0016593 Cdc73/Paf1 complex