Protein
MIA_00960_1
Length
509 amino acids
Browser: contig01:2714558-2716088+
Protein function
| EGGNOG: | 0PHJB | YTM1 | Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome (By similarity) |
|---|---|---|---|
| SGD closest match: | S000005798 | YTM1 | Ribosome biogenesis protein YTM1 |
| CGD closest match: | CAL0000176486 | YTM1 | Ribosome biogenesis protein YTM1 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9X6C2_GEOCN | 53.770% | 504 | 1.97e-144 | Ribosome biogenesis protein YTM1 OS=Geotrichum candidum GN=YTM1 PE=3 SV=1 |
| MCA_04034_1 | 47.004% | 534 | 1.68e-127 | MCA_04034_1 |
| A0A167CQA8_9ASCO | 48.622% | 508 | 1.16e-125 | Ribosome biogenesis protein YTM1 OS=Sugiyamaella lignohabitans GN=YTM1 PE=3 SV=1 |
| UniRef50_A0A167CQA8 | 48.622% | 508 | 3.19e-122 | Ribosome biogenesis protein YTM1 n=3 Tax=Saccharomycetales TaxID=4892 RepID=A0A167CQA8_9ASCO |
| A0A060THC1_BLAAD | 47.358% | 492 | 1.54e-120 | Ribosome biogenesis protein YTM1 OS=Blastobotrys adeninivorans GN=YTM1 PE=3 SV=1 |
| A0A1E3PP16_9ASCO | 44.330% | 485 | 9.99e-101 | WD40 repeat-like protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_11871 PE=3 SV=1 |
| YTM1_YARLI | 41.209% | 546 | 1.52e-99 | Ribosome biogenesis protein YTM1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YTM1 PE=3 SV=1 |
| YTM1_CANAL | 42.685% | 499 | 1.97e-99 | Ribosome biogenesis protein YTM1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YTM1 PE=3 SV=1 |
| YTM1_YEAST | 41.235% | 502 | 9.66e-97 | Ribosome biogenesis protein YTM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YTM1 PE=1 SV=1 |
| A0A1E4TMD2_9ASCO | 38.277% | 499 | 2.57e-74 | Ribosome biogenesis protein YTM1 OS=Tortispora caseinolytica NRRL Y-17796 GN=YTM1 PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0399
Protein family membership
- WD repeat WDR12/Ytm1 (IPR028599)
Domains and repeats
-
Domain
-
Repeat
-
Repeat
1
50
100
150
200
250
300
350
400
450
509
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
-
cd00200 (WD40)
-
mobidb-lite (disord...)
Residue annotation
-
structural tetrad ...
Protein sequence
>MIA_00960_1 MTTEEEAQASSSTQVQIRLVTRDERYAVPSVPLYVPVSLKRYGLSEVVNKLLEQGHEDRVAEGTLLPGETEAEGYQTTPF DFLTDDGKLLRATLAEYLAQRGLSAESSVTLEYTRAILPPSFLASYAHPDWVSAVSIAPETVANNNTKVSSHSPIASGSY DGIIRLWTAAGSVAHSLVAHNAAIKAVRWTSPSSLVSASNDRMLCLWKLKPEAAGNGNNDDDTINITASSSIDALLRGHT DAVNNVAVAPSTLASGTPARGDILSASADHTVRLWSSDYTTMPVYEAPASSSASTKNTASQKRRKLAQASLPAARSRSPL LTLAAHTAPVTAAIFHPSPSHANSVAYSVSLDHTLKTWDLTSSGAVVVSRTTSFPLTCLAALPDLGLLAIGSSARHILLH DPRSGNDSTGDLGDAALSKATLTGHTNFVTAIAPSPFSSYVFASSSMDGTVRVWDARAQSSLYVLPRESGQKGMGGVAGV FDVDWAKSIGIVSGGKDNQLQINSSGFTN
GO term prediction
Biological Process
GO:0042254 ribosome biogenesis
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.