Protein
MCA_04034_1
Length
521 amino acids
Gene name: YTM1
Description: Ribosome biogenesis protein YTM1
Browser: contigC:1818379-1819945+
RNA-seq: read pairs 1041, FPKM 24.6, percentile rank 47.4% (100% = highest expression)
Protein function
| Annotation: | YTM1 | Ribosome biogenesis protein YTM1 | |
|---|---|---|---|
| KEGG: | K14863 | YTM1 | ribosome biogenesis protein YTM1 |
| EGGNOG: | 0PHJB | YTM1 | Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome (By similarity) |
| SGD closest match: | S000005798 | YTM1 | Ribosome biogenesis protein YTM1 |
| CGD closest match: | CAL0000176486 | YTM1 | Ribosome biogenesis protein YTM1 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_00960_1 | 47.19% | 534 | 1e-152 | MIA_00960_1 |
| A0A0J9X6C2_GEOCN | 42.58% | 519 | 1e-122 | Ribosome biogenesis protein YTM1 OS=Geotrichum candidum GN=YTM1 PE=3 SV=1 |
| A0A167CQA8_9ASCO | 42.61% | 514 | 5e-119 | Ribosome biogenesis protein YTM1 OS=Sugiyamaella lignohabitans GN=YTM1 PE=3 SV=1 |
| UniRef50_A0A167CQA8 | 42.61% | 514 | 1e-115 | Ribosome biogenesis protein YTM1 n=3 Tax=Saccharomycetales TaxID=4892 RepID=A0A167CQA8_9ASCO |
| A0A060THC1_BLAAD | 38.18% | 495 | 5e-100 | Ribosome biogenesis protein YTM1 OS=Blastobotrys adeninivorans GN=YTM1 PE=3 SV=1 |
| A0A1E3PP16_9ASCO | 36.96% | 506 | 9e-92 | WD40 repeat-like protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_11871 PE=3 SV=1 |
| YTM1_YEAST | 35.78% | 517 | 1e-89 | Ribosome biogenesis protein YTM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YTM1 PE=1 SV=1 |
| YTM1_YARLI | 35.55% | 557 | 3e-85 | Ribosome biogenesis protein YTM1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YTM1 PE=3 SV=1 |
| YTM1_CANAL | 36.49% | 507 | 8e-84 | Ribosome biogenesis protein YTM1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YTM1 PE=3 SV=1 |
| A0A1E4TMD2_9ASCO | 32.41% | 503 | 6e-75 | Ribosome biogenesis protein YTM1 OS=Tortispora caseinolytica NRRL Y-17796 GN=YTM1 PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0015
Protein family membership
- WD repeat WDR12/Ytm1 (IPR028599)
Domains and repeats
-
Domain
-
Repeat
-
Repeat
1
50
100
150
200
250
300
350
400
450
521
Detailed signature matches
no IPR
Unintegrated signatures
Protein sequence
>MCA_04034_1 MTTENQEQNEQQQAPAFSPESQIQIRLVTRDFKYSIPEVPLYVPVSLKRYGLSEIVNKLLEQKQREEAEDEENLEFQHTP FDFLSDDGKLLHGSLYNYLLEKTQQDNESEEGAAAPKISTESILTLEYTRSILPPSYKTSYEHPDWVSSVNIFSHEKYGL KSAATHDDVATGSYDGIVRLWSPKGEVLHELVAHNAAITSVKWVPDYFKATEGEQEEDSTITKRRLVSGSNDNTMCVWQF ETNTSTKESESKLVALYRGHTDPVTCIATSSTASSVNLVSGSADGSIKLWNSDYSKLPVYSEEDSSSKKNLASKKRRKLA QSSLAMTKHRASLATLSSGNDQQQVSSVLFHPNDNSVLYSAHFSHKFCTWDLETQQLVNALQTNYSLLSMASLKALNLVA LGTSARHILLIDPRDSASEKSSEVTKFSKASLVGHTNFVTGMAPCPFSDYVFASSSMDGTVRVWDVRAQQSLHVIQREAS ASANKLGGLNGVLDIDWTKNVGIASGGKDNQLQINSSGFIQ
GO term prediction
Biological Process
GO:0042254 ribosome biogenesis
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.