Protein

MIA_00886_1

Length
109 amino acids

Browser: contig01:2500624-2501066+

Protein function

EGGNOG:0PR0Rsmall nuclear ribonucleoprotein (LSM8)
SGD closest match:S000003783LSM8U6 snRNA-associated Sm-like protein LSm8
CGD closest match:CAL0000197391orf19.4305.1U4/U6-U5 snRNP complex subunit

Protein alignments

%idAln lengthE-value
MCA_05573_167.416%896.14e-39MCA_05573_1
A0A0J9X873_GEOCN50.000%1001.33e-31Similar to Saccharomyces cerevisiae YJR022W LSM8 Lsm (Like Sm) protein OS=Geotrichum candidum GN=BN980_GECA05s00901g PE=4 SV=1
UniRef50_R8BRS552.326%865.22e-28Putative small nuclear ribonucleoprotein lsm8 protein n=9 Tax=saccharomyceta TaxID=716545 RepID=R8BRS5_TOGMI
Q6CFJ1_YARLI52.273%882.66e-29YALI0B06534p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B06534g PE=4 SV=1
A0A060T9G9_BLAAD51.136%882.06e-29ARAD1C44550p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C44550g PE=4 SV=1
A0A1E3PNZ1_9ASCO50.000%882.24e-27Sm-like ribonucleo protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_64315 PE=4 SV=1
A0A1D8PNJ9_CANAL43.678%872.26e-22U4/U6-U5 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.4305.1 PE=4 SV=1
LSM8_YEAST38.095%1053.20e-13U6 snRNA-associated Sm-like protein LSm8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM8 PE=1 SV=2

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1378

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 10 20 30 40 50 60 70 80 90 100 109

Detailed signature matches

  1. Domain IPR034103
    Sm-like protein Lsm8
    1. cd01727 (LSm8)
  2. Domain IPR010920
    LSM domain
    1. SSF50182 (Sm-like r...)
  3. Domain IPR001163
    LSM domain, eukaryotic/archaea-type
    1. PF01423 (LSM)
    2. SM00651 (Sm3)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:2.30.30...

Residue annotation

  1. putative oligomer ...
  2. Sm1 motif cd01727
  3. putative RNA bindi...
  4. Sm2 motif cd01727

Protein sequence

>MIA_00886_1
MSALKEYLEKKIAIITTDGRLLVGKLEGFDQATNLIISSTHERIITSEEEDEPSSIVSLGLYILKGNNVATIGLLDEEAD
AAIDWEKVCDRLATQTESTNELKGSWKTS

GO term prediction

Biological Process

GO:0000398 mRNA splicing, via spliceosome

Molecular Function

None predicted.

Cellular Component

GO:0005688 U6 snRNP
GO:0046540 U4/U6 x U5 tri-snRNP complex