Protein
MCA_05573_1
Length
108 amino acids
Gene name: LSM8
Description: U6 snRNA-associated Sm-like protein LSm8
Browser: contigD:1679194-1679728-
RNA-seq: read pairs 309, FPKM 35.0, percentile rank 57.1% (100% = highest expression)
Protein function
| Annotation: | LSM8 | U6 snRNA-associated Sm-like protein LSm8 | |
|---|---|---|---|
| KEGG: | K12627 | LSM8 | U6 snRNA-associated Sm-like protein LSm8 |
| EGGNOG: | 0PR0R | small nuclear ribonucleoprotein (LSM8) | |
| SGD closest match: | S000003783 | LSM8 | U6 snRNA-associated Sm-like protein LSm8 |
| CGD closest match: | CAL0000197391 | orf19.4305.1 | U4/U6-U5 snRNP complex subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_00886_1 | 67.42% | 89 | 1e-37 | MIA_00886_1 |
| A0A0J9X873_GEOCN | 51.49% | 101 | 8e-34 | Similar to Saccharomyces cerevisiae YJR022W LSM8 Lsm (Like Sm) protein OS=Geotrichum candidum GN=BN980_GECA05s00901g PE=4 SV=1 |
| UniRef50_R8BRS5 | 48.98% | 98 | 4e-27 | Putative small nuclear ribonucleoprotein lsm8 protein n=9 Tax=saccharomyceta TaxID=716545 RepID=R8BRS5_TOGMI |
| A0A1E3PNZ1_9ASCO | 45.54% | 101 | 3e-28 | Sm-like ribonucleo protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_64315 PE=4 SV=1 |
| Q6CFJ1_YARLI | 45.45% | 99 | 4e-27 | YALI0B06534p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B06534g PE=4 SV=1 |
| A0A060T9G9_BLAAD | 47.37% | 95 | 5e-27 | ARAD1C44550p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C44550g PE=4 SV=1 |
| A0A1D8PNJ9_CANAL | 37.62% | 101 | 5e-20 | U4/U6-U5 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.4305.1 PE=4 SV=1 |
| LSM8_YEAST | 39.53% | 86 | 2e-12 | U6 snRNA-associated Sm-like protein LSm8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM8 PE=1 SV=2 |
| A0A1E4TD73_9ASCO | 37.21% | 86 | 2e-07 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_18456 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1790
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Domain
1
10
20
30
40
50
60
70
80
90
100
108
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
-
putative oligomer ...
-
Sm1 motif cd01727
-
putative RNA bindi...
-
Sm2 motif cd01727
Protein sequence
>MCA_05573_1 MSAIKDYLQKKILVLTTDGRILVGKLEGFDQLTNLIISDVEERIITPESSDEDNPSTVVKIGTYLLRGNFVATIGLVDEE LDNSIDWTKTHGKTIYSIRHAEEKFYKN
GO term prediction
Biological Process
GO:0000398 mRNA splicing, via spliceosome
Molecular Function
None predicted.
Cellular Component
GO:0005688 U6 snRNP
GO:0046540 U4/U6 x U5 tri-snRNP complex