Protein
MCA_06232_1
Length
96 amino acids
Gene name: LSM5
Description: U6 snRNA-associated Sm-like protein LSm5
Browser: contigD:3629630-3630059+
RNA-seq: read pairs 901, FPKM 114.8, percentile rank 81.0% (100% = highest expression)
Protein function
| Annotation: | LSM5 | U6 snRNA-associated Sm-like protein LSm5 | |
|---|---|---|---|
| KEGG: | K12624 | LSM5 | U6 snRNA-associated Sm-like protein LSm5 |
| EGGNOG: | 0PQY0 | LSM5 | U6 snRNA-associated Sm-like protein LSm5 |
| SGD closest match: | S000000948 | LSM5 | U6 snRNA-associated Sm-like protein LSm5 |
| CGD closest match: | CAL0000192540 | orf19.7256 | RNA-binding protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_05091_1 | 71.43% | 70 | 1e-33 | MIA_05091_1 |
| UniRef50_B8MW08 | 65.22% | 69 | 5e-28 | Small nuclear ribonucleoprotein (LSM5), putative n=68 Tax=Eukaryota TaxID=2759 RepID=B8MW08_ASPFN |
| A0A060TDE9_BLAAD | 52.38% | 84 | 4e-27 | ARAD1D43230p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D43230g PE=4 SV=1 |
| A0A0J9X5L6_GEOCN | 60.29% | 68 | 3e-25 | Similar to Saccharomyces cerevisiae YER146W LSM5 Lsm (Like Sm) protein OS=Geotrichum candidum GN=BN980_GECA03s02815g PE=4 SV=1 |
| A0A1D8PFX4_CANAL | 55.22% | 67 | 6e-21 | RNA-binding protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.7256 PE=4 SV=1 |
| Q6CEP6_YARLI | 52.24% | 67 | 6e-20 | YALI0B14058p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B14058g PE=4 SV=1 |
| A0A1E3PDU3_9ASCO | 78.05% | 41 | 7e-20 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_28183 PE=4 SV=1 |
| A0A1E4TID2_9ASCO | 50.79% | 63 | 9e-19 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_21604 PE=4 SV=1 |
| LSM5_YEAST | 41.89% | 74 | 6e-16 | U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0137
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
10
20
30
40
50
60
70
80
90
96
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
-
oligomer interface...
-
Sm1 motif cd01732
-
putative RNA bindi...
-
Sm2 motif cd01732
Protein sequence
>MCA_06232_1 MSQETTVTSPAIVAPAAGVAPLLPLEIVDKCIGSRIWIILRNNKEFKGTLIGFDDYVNMVLEDVTEYDENGEVDKIPKML LNGNNVQLIVPENQED
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.