Protein
MCA_06056_1
Length
371 amino acids
Gene name: SWD3
Description: COMPASS component SWD3
Browser: contigD:3134625-3135741+
RNA-seq: read pairs 263, FPKM 8.7, percentile rank 23.8% (100% = highest expression)
Protein function
| Annotation: | SWD3 | COMPASS component SWD3 | |
|---|---|---|---|
| KEGG: | K14963 | WDR5 | COMPASS component SWD3 |
| EGGNOG: | 0PIXX | SWD3 | WD repeat protein |
| SGD closest match: | S000000379 | SWD3 | COMPASS component SWD3 |
| CGD closest match: | CAL0000190787 | SWD3 | Swd3p |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_04255_1 | 50.42% | 359 | 2e-124 | MIA_04255_1 |
| A0A0J9X7Q2_GEOCN | 46.42% | 377 | 4e-115 | Similar to Saccharomyces cerevisiae YBR175W SWD3 Essential subunit of the COMPASS (Set1C) complex OS=Geotrichum candidum GN=BN980_GECA05s02452g PE=4 SV=1 |
| A0A167EGN1_9ASCO | 45.10% | 337 | 3e-97 | Swd3p OS=Sugiyamaella lignohabitans GN=SWD3 PE=4 SV=1 |
| UniRef50_A0A167EGN1 | 45.10% | 337 | 8e-94 | Swd3p n=2 Tax=Saccharomycetales TaxID=4892 RepID=A0A167EGN1_9ASCO |
| Q6C0A7_YARLI | 54.46% | 224 | 1e-84 | YALI0F26389p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F26389g PE=4 SV=1 |
| A0A060T584_BLAAD | 42.62% | 305 | 5e-80 | ARAD1B08624p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B08624g PE=4 SV=1 |
| A0A1E3PIW7_9ASCO | 39.71% | 340 | 5e-76 | WD40 repeat-like protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_47003 PE=4 SV=1 |
| A0A1D8PPT7_CANAL | 32.27% | 375 | 6e-59 | Swd3p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SWD3 PE=4 SV=1 |
| A0A1E4TBL2_9ASCO | 46.15% | 169 | 1e-45 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_17995 PE=4 SV=1 |
| SWD3_YEAST | 35.51% | 214 | 5e-34 | COMPASS component SWD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWD3 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0891
Predicted cleavage: 95
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Repeat
-
Repeat
1
50
100
150
200
250
300
371
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
-
cd00200 (WD40)
-
mobidb-lite (disord...)
Residue annotation
-
structural tetrad ...
Protein sequence
>MCA_06056_1 MTSDSPMPPPVKKQRLNGIPDQSTVKSSKHIFTCKITLHGHTAAVTAAKYSPNGKYIATASSDSTIKIWSAYTGNLFATL VGHLRGISDLSWCPDSKHLVSVSDDKSVRVWDAIITQKVVRILRGHTHYATSVDVNKKGNLIVSGSSDENLKIWDLRHSK CLRTLAAHTDPVSAVCFSKDGTVIASASHDGLIRLWDTRAGHCLKTFVGETNSPILYVSFLPNDEYLLSSTLDGRLRMWD IRKNQVVKTYLYHEDDLEQQPSETDTKTEIKTEDSQEENAKEKTPETINEYKYSSRSMVLPTLGPGLVAQGIGKHTIAFW ELQSRVLIDRLNDHEDIVFDLCYHPNLDEFVSASADGTAKIWSLNNDYTFK
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.