Protein
MCA_05877_1
Length
368 amino acids
Gene name: TFB4
Description: RNA polymerase II transcription factor B subunit 4
Browser: contigD:2615868-2617147+
RNA-seq: read pairs 519, FPKM 17.4, percentile rank 37.5% (100% = highest expression)
Protein function
| Annotation: | TFB4 | RNA polymerase II transcription factor B subunit 4 | |
|---|---|---|---|
| KEGG: | K03143 | TFIIH3 | transcription initiation factor TFIIH subunit 3 |
| EGGNOG: | 0PIUI | TFB4 | Transcription factor |
| SGD closest match: | S000006260 | TFB4 | RNA polymerase II transcription factor B subunit 4 |
| CGD closest match: | CAL0000195519 | orf19.4194 | TFIIH/NER complex subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03016_1 | 68.17% | 333 | 9e-168 | MIA_03016_1 |
| A0A0J9X975_GEOCN | 59.48% | 343 | 1e-149 | Similar to Saccharomyces cerevisiae YPR056W TFB4 Subunit of TFIIH complex, involved in transcription initiation OS=Geotrichum candidum GN=BN980_GECA05s05697g PE=4 SV=1 |
| UniRef50_A0A0J9X975 | 59.48% | 343 | 2e-146 | Similar to Saccharomyces cerevisiae YPR056W TFB4 Subunit of TFIIH complex, involved in transcription initiation n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X975_GEOCN |
| A0A167EB47_9ASCO | 49.85% | 335 | 1e-119 | TFIIH/NER complex subunit TFB4 OS=Sugiyamaella lignohabitans GN=TFB4 PE=4 SV=1 |
| A0A060TDD0_BLAAD | 51.37% | 329 | 4e-112 | ARAD1B23760p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B23760g PE=4 SV=1 |
| A0A1E3PNW4_9ASCO | 51.47% | 340 | 1e-106 | Transcription factor Tfb4 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_49442 PE=4 SV=1 |
| TFB4_YARLI | 44.74% | 342 | 9e-93 | RNA polymerase II transcription factor B subunit 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TFB4 PE=3 SV=1 |
| TFB4_YEAST | 37.17% | 339 | 9e-78 | RNA polymerase II transcription factor B subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB4 PE=1 SV=1 |
| A0A1D8PPE3_CANAL | 35.71% | 364 | 2e-72 | TFIIH/NER complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.4194 PE=4 SV=1 |
| A0A1E4TIU1_9ASCO | 36.77% | 310 | 4e-65 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_17690 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0088
Protein family membership
- TFIIH subunit Tfb4/p34 (IPR004600)
Domains and repeats
None predicted.
Detailed signature matches
no IPR
Unintegrated signatures
-
CYTOPLASMIC_D... (C...)
-
NON_CYTOPLASM... (N...)
-
TRANSMEMBRANE (Tran...)
-
mobidb-lite (disord...)
Protein sequence
>MCA_05877_1 MNSVDDTSNALKGTSTASEDHPNFLAVIIETNPQAWALIKDQTTFKQAIQAFLVFINAHIAMNNLNQVCVVASHTDRAQF LYPSKSTTDSSATNRPTTQQSLNSNNTGANDELDYSIEHAKSMYKQFRDVDDAVTKELKHLIEQEVSIINTDESKSKKYG SALSGALSMTLSYLNKVCTLSEDIRMRSRILILSVTGDLDSQYIPIMNCIFAAQTHKIPIDVCKLGGAPSFLQQACDSTN GIYMKIKHHQGLIQYLLGAYSVDPELRPHVNLSTQKDVDFRAACFITKRIVDIGFVCSVCLCIMSIILPSMECPMCGTKF KPEIIKKLTVKPVAHLPKKKKKKLTSSVNSSTNNTPTSSPALAPAGSN
GO term prediction
Biological Process
GO:0006289 nucleotide-excision repair
GO:0006355 regulation of transcription, DNA-templated
Molecular Function
None predicted.
Cellular Component
GO:0000439 core TFIIH complex