Protein
MCA_05826_1
Length
345 amino acids
Gene name: SWD2
Description: COMPASS component SWD2
Browser: contigD:2435783-2436821+
RNA-seq: read pairs 521, FPKM 18.6, percentile rank 39.5% (100% = highest expression)
Protein function
| Annotation: | SWD2 | COMPASS component SWD2 | |
|---|---|---|---|
| KEGG: | K14962 | WDR82 | COMPASS component SWD2 |
| EGGNOG: | 0PFQ5 | SWD2 | WD repeat protein |
| SGD closest match: | S000001501 | SWD2 | COMPASS component SWD2 |
| CGD closest match: | CAL0000198527 | SWD2 | WD-repeat containing protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9XFA5_GEOCN | 56.51% | 338 | 1e-134 | Similar to Saccharomyces cerevisiae YKL018W SWD2 Subunit of the COMPASS (Set1C) complex OS=Geotrichum candidum GN=BN980_GECA13s02419g PE=4 SV=1 |
| MIA_05158_1 | 73.31% | 236 | 4e-128 | MIA_05158_1 |
| A0A060SZ37_BLAAD | 53.33% | 330 | 2e-123 | ARAD1C05500p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C05500g PE=4 SV=1 |
| A0A167F7I9_9ASCO | 50.90% | 334 | 4e-112 | Swd2p OS=Sugiyamaella lignohabitans GN=SWD2 PE=4 SV=1 |
| UniRef50_A0A167F7I9 | 50.90% | 334 | 1e-108 | Swd2p n=2 Tax=Trichomonascaceae TaxID=410830 RepID=A0A167F7I9_9ASCO |
| A0A1E3PE67_9ASCO | 47.23% | 343 | 9e-107 | WD40 repeat-like protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_71826 PE=4 SV=1 |
| A0A1E4TEE3_9ASCO | 46.44% | 323 | 6e-107 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_99912 PE=4 SV=1 |
| Q6C0W1_YARLI | 47.26% | 328 | 1e-105 | YALI0F21263p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F21263g PE=4 SV=1 |
| Q59PV3_CANAL | 37.90% | 343 | 2e-71 | WD-repeat containing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SWD2 PE=4 SV=1 |
| SWD2_YEAST | 32.08% | 318 | 7e-59 | COMPASS component SWD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWD2 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0239
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Repeat
1
50
100
150
200
250
300
345
Detailed signature matches
-
-
PS00678 (WD_REPEATS_1)
-
Protein sequence
>MCA_05826_1 MSSSKSSSNKESEIPINTGVVCSFRPSKILANHKEQAEITSIDFDDTGDYCITSGNDESIQLYDVKQGKHMKTVYSKKYG VTLAKFTHHHMNCIYPSTKEDDTIRYLSLHDNSYIRYFRGHKGRIHDIDVSPIEDLVLSGSDDNTVRLWDLRSPNCQGLL NTPAPSLVNFDPTAVIFSIASEKLNSIALYDIRNFDKVPFSTFKISTNHQPWEKIEFANDGKRMLLSTLGNTHYVLDSFN GDVVSTLVGHEPVPYPSSRNTGHTTISQDGRFVFSGSGNCKLYIWDILKEPGPDKKLRPIKELDCINPPALVTMNPKKLL LATAKNDLTLWLPDLNLDNSNRDRR
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.