Protein

MCA_05699_1

Length
356 amino acids

Gene name: RFC5

Description: Replication factor C subunit 5

Browser: contigD:2070629-2071700-

RNA-seq: read pairs 720, FPKM 24.9, percentile rank 47.5% (100% = highest expression)

Protein function

Annotation:RFC5Replication factor C subunit 5
KEGG:K10756RFC3_5 replication factor C subunit 3/5
EGGNOG:0PGQJRFC5replication factor C subunit
SGD closest match:S000000291RFC5Replication factor C subunit 5
CGD closest match:CAL0000201502RFC5Replication factor C subunit 5

Protein alignments

%idAln lengthE-value
A0A0J9X814_GEOCN70.14%3550.0Similar to Saccharomyces cerevisiae YBR087W RFC5 Subunit of heteropentameric Replication factor C (RF-C) OS=Geotrichum candidum GN=BN980_GECA04s01880g PE=4 SV=1
MIA_00362_170.95%3580.0MIA_00362_1
A0A167F1B1_9ASCO67.71%3532e-174Replication factor C subunit 5 OS=Sugiyamaella lignohabitans GN=RFC5 PE=4 SV=1
A0A1E3PDT3_9ASCO65.24%3511e-166Replication factor C subunit 5 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_53229 PE=4 SV=1
A0A060T1J4_BLAAD63.82%3511e-162ARAD1C25124p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C25124g PE=4 SV=1
UniRef50_Q8X08260.62%3532e-151Replication factor C subunit 5 n=83 Tax=Opisthokonta TaxID=33154 RepID=RFC5_NEUCR
Q6CB59_YARLI58.81%3522e-144YALI0C21692p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C21692g PE=4 SV=1
A0A1D8PG80_CANAL54.49%3561e-133Replication factor C subunit 5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RFC5 PE=4 SV=1
A0A1E4TED6_9ASCO53.67%3541e-124Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_100606 PE=4 SV=1
RFC5_YEAST52.65%3593e-123Replication factor C subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFC5 PE=1 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0246

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 50 100 150 200 250 300 356

Detailed signature matches

  1. Domain IPR027417
    P-loop containing nucleoside triphosphate hydrolase
    1. SSF52540 (P-loop co...)
  2. Domain IPR003593
    AAA+ ATPase domain
    1. SM00382 (AAA_5)
  3. Domain IPR008921
    DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
    1. SSF48019 (post-AAA+...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:1.10.8.60
  2. G3DSA:1.20.27...
  3. G3DSA:3.40.50...
  4. PF13177 (DNA_pol3_d...)
  5. cd00009 (AAA)

Residue annotation

  1. Walker A motif cd0...
  2. ATP binding site c...
  3. Walker B motif cd0...
  4. arginine finger cd...

Protein sequence

>MCA_05699_1
MALWVDKHRPKSLEKLNYHDELTLQLKALATSSDFPHMLVYGPSGAGKKTRVMAVLKELYGPSAERIKIASRVFKISSSR
KVEFSVVSSNYHIELTPSDMGNNDRIVIQDLLKEVAQTQQVDINAKHRFKTVVINEADSLTRDAQAALRRTMEKYSFNIR
LILLATSTSNIIPPIKSRTLLVRVPAPTVDDIGKVISAVAKKEKVTLPKNPESLDAFFQKLSLASNRNLRKALLMFEAMY
SQTKGPITEQTPIRPPDWEMVVNKIADDINRTRSVAKLLEIRTVLYELLSHCIPATAILKNLTFRLLTKVRMEVKPDILE
ASAFYYHRLRQGSKAIFHLEACIAKYMQIIETFSTK

GO term prediction

Biological Process

GO:0006260 DNA replication

Molecular Function

GO:0003677 DNA binding

Cellular Component

None predicted.