Protein

MCA_05680_1

Length
259 amino acids

Gene name: SDO1

Description: Ribosome maturation protein SDO1

Browser: contigD:2018302-2019146-

RNA-seq: read pairs 1738, FPKM 82.6, percentile rank 75.8% (100% = highest expression)

Protein function

Annotation:SDO1Ribosome maturation protein SDO1
KEGG:K14574SDO1 ribosome maturation protein SDO1
EGGNOG:0PFAQFG06894.1Ribosome maturation protein
SGD closest match:S000004012SDO1Ribosome maturation protein SDO1
CGD closest match:CAL0000178770orf19.2708Guanine nucleotide exchange factor

Protein alignments

%idAln lengthE-value
MIA_06257_174.52%2599e-142MIA_06257_1
A0A0J9XH12_GEOCN72.20%2599e-134Similar to Saccharomyces cerevisiae YLR022C SDO1 Essential protein involved in 60S ribosome maturation OS=Geotrichum candidum GN=BN980_GECA16s00582g PE=4 SV=1
A0A060T3C1_BLAAD65.49%2557e-119ARAD1A08492p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A08492g PE=4 SV=1
A0A1E3PD67_9ASCO63.32%2594e-114Shwachman-Bodian-diamond syndrome protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_53802 PE=4 SV=1
A0A1E4TKP6_9ASCO58.69%2593e-108Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_917 PE=4 SV=1
Q6C0F0_YARLI58.80%2504e-95YALI0F25267p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F25267g PE=4 SV=1
A0A167ER49_9ASCO63.43%2161e-90Guanine nucleotide exchange factor SDO1 OS=Sugiyamaella lignohabitans GN=SDO1 PE=4 SV=1
UniRef50_A0A167ER4963.43%2164e-87Guanine nucleotide exchange factor SDO1 n=1 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A167ER49_9ASCO
SDO1_YEAST55.51%2543e-89Ribosome maturation protein SDO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDO1 PE=1 SV=1
Q5AF99_CANAL52.34%2562e-87Guanine nucleotide exchange factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2708 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1119

Protein family membership

Domains and repeats

  1. Domain
  2. Domain
1 50 100 150 200 259

Detailed signature matches

  1. Family IPR002140
    Ribosome maturation protein Sdo1/SBDS
    1. TIGR00291
  2. Domain IPR019783
    Ribosome maturation protein SBDS, N-terminal
    1. SSF89895 (FYSH domain)
    2. PF01172 (SBDS)
    3. G3DSA:3.30.12...
  3. Domain IPR018978
    Ribosome maturation protein SBDS, C-terminal
    1. PF09377 (SBDS_C)
  4. SITE IPR018023
    Ribosome maturation protein SBDS, conserved site
    1. PS01267 (UPF0023)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. G3DSA:3.30.70...
  3. SSF109728 (Hypothet...)

Protein sequence

>MCA_05680_1
MPIQQPSGSIKLTNVSLVRMKKGKKRFEIACYQNKVQDWRKGVEKDLDEVLQIPQVFFNVSKGQVASQEDLKQAFGTGDV
DTVVQEILKKGELQVGGKERQAQASQIRAEILQLVSQKCVNSNTKRPYPVTIIEKALQELGFNFLSNKSAKSQTLDAIRL
LVSKQIIPIVRAKMKVQITCATGDANDVKTAKNKYADKVKQLIEEVEDEDWSSNKWELVGFIDPGNFRKLDQLIQTESKG
KTTLQVLDTAVIVQGEDAL

GO term prediction

Biological Process

GO:0042254 ribosome biogenesis
GO:0042256 mature ribosome assembly

Molecular Function

None predicted.

Cellular Component

None predicted.