Protein
MCA_05154_1
Length
1,027 amino acids
Gene name: DBP10
Description: ATP-dependent RNA helicase DBP10
Browser: contigD:485344-488428-
RNA-seq: read pairs 1068, FPKM 12.8, percentile rank 30.7% (100% = highest expression)
Protein function
| Annotation: | DBP10 | ATP-dependent RNA helicase DBP10 | |
|---|---|---|---|
| KEGG: | K14808 | DDX54 | ATP-dependent RNA helicase DDX54/DBP10 [EC:3.6.4.13] |
| EGGNOG: | 0PHMJ | DBP10 | ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs (By similarity) |
| SGD closest match: | S000002189 | DBP10 | ATP-dependent RNA helicase DBP10 |
| CGD closest match: | CAL0000186628 | DBP10 | ATP-dependent RNA helicase DBP10 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9XEA3_GEOCN | 58.70% | 920 | 0.0 | Similar to Saccharomyces cerevisiae YDL031W DBP10 Putative ATP-dependent RNA helicase of the DEAD-box protein family OS=Geotrichum candidum GN=BN980_GECA11s03585g PE=4 SV=1 |
| A0A167CX74_9ASCO | 56.95% | 906 | 0.0 | Dbp10p OS=Sugiyamaella lignohabitans GN=DBP10 PE=4 SV=1 |
| A0A060T4E8_BLAAD | 54.64% | 884 | 0.0 | ARAD1B02904p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B02904g PE=4 SV=1 |
| DBP10_YEAST | 48.99% | 888 | 0.0 | ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DBP10 PE=1 SV=2 |
| UniRef50_Q12389 | 48.99% | 888 | 0.0 | ATP-dependent RNA helicase DBP10 n=46 Tax=Saccharomycetales TaxID=4892 RepID=DBP10_YEAST |
| MIA_03811_1 | 64.30% | 577 | 0.0 | MIA_03811_1 |
| DBP10_YARLI | 51.15% | 565 | 2e-165 | ATP-dependent RNA helicase DBP10 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DBP10 PE=3 SV=1 |
| DBP10_CANAL | 49.49% | 584 | 2e-157 | ATP-dependent RNA helicase DBP10 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=DBP10 PE=3 SV=1 |
| A0A1E4TKT9_9ASCO | 43.06% | 576 | 1e-123 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_42961 PE=4 SV=1 |
| A0A1E3PEK3_9ASCO | 71.83% | 252 | 1e-117 | DEAD-domain-containing protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_83931 PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0033
Protein family membership
None predicted.
Domains and repeats
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Domain
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Domain
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Domain
1
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1027
Detailed signature matches
no IPR
Unintegrated signatures
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cd00079 (HELICc)
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cd00268 (DEADc)
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mobidb-lite (disord...)
Residue annotation
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ATP binding site c...
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Mg++ binding site ...
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motif III cd00268
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nucleotide binding...
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ATP-binding site c...
Protein sequence
>MCA_05154_1 MSDSESEIDISKAIGLDTGFSSSSDDSSSEDSDFYQDEIIDSSSDEEENEQEDNDDDNTKTEKKDSNNEILNINKDRLEK IRQFENSAKSESTEEPVDLGKFPKLEMSDDDSDSDSDNNNSYNDNKTGKKRSRKDDDDDDDAFFNKLGVQAQGTKKKSIY SFRGLGLSKLLCANVARRGFKMATPIQRKTIPYILEGRDVVGMARTGSGKTAAFVLPLLDRLKSHSATVGIRAIILSPSR ELAEQTMRVVKEFSRGTDLRCALIVGGTSLDDQFKTMTNNPDIVIATPGRFLHLKIEMKLDLRSVQHIIFDEADRLFELG FAEQLNEVLAALSRSRQTLLFSATLPKSLVEFAKAGLQDPVLLRLDAETKISEDLEMSYFAIKDGEREAALAYILGSVIK MPIEKNLENRDKFKDEDYNSDDDEDDDDDDDDDENEDNENDKGKKKNKSKKGKKFEKWKKLPHRNELPSPYSTIVFTPTK YHVEYIAQLLKALGYAVSYIYGALDQTARKDQLYKFRSGRTTVLVVTDVAARGIDIPVLANVINYSLPSSPKVFVHRVGR TARAGNRGWAYSLIREMDIPYLLDLELFLGRKLLIPPKVIPNQRINYTERLVLGSFPREDLEQNMEEVDAIMKKDYDLSS LRDVAKRGERQYLKSRESASQESSKRSKEILNTPGWDGRHPLFGTEDLEKERESFLEKLANRSNKDTVFEYKKTQFADVA ELMQRRRQQIAPIRAKAEERKALQKKEAALGLVHTLDAEMFSDDEDDDQKKDLATEQELEKAFPEKNLNKGSSGSKKKKK DYKDSNFYMSHYAAGSSAAEDRAYSINGGKTEFFGDAARNATFDLNEEGKEFVQKQGMKWDKKRGKYINAGSTGDKKSQQ PIKYIRGENGTKIPASYRSGRYDAWREAHKAAPLRVGTAENPDGSNKVNFNAGVNQMPIGSGSGGGHPKHKKVVAPKRAD KARDDYHKQRKKVSSALERGIKIKGKQPLYNGESEIHSVDEVRKARELLQKRREKNARPSKKKKTTR
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0004004 ATP-dependent RNA helicase activity
GO:0005524 ATP binding
Cellular Component
GO:0005634 nucleus