Protein

MCA_05085_1

Length
140 amino acids

Description: putative RNA polymerase II subunit Rpb4

Browser: contigD:329780-330386+

RNA-seq: read pairs 309, FPKM 27.1, percentile rank 49.8% (100% = highest expression)

Protein function

Annotation:putative RNA polymerase II subunit Rpb4
EGGNOG:0PPJNRNA polymerase III subunit
SGD closest match:S000003548RPC17DNA-directed RNA polymerase III subunit RPC9
CGD closest match:CAL0000193163orf19.3990DNA-directed RNA polymerase III subunit

Protein alignments

%idAln lengthE-value
MIA_03822_169.05%1266e-57MIA_03822_1
A0A0J9XJF7_GEOCN61.11%1266e-54Similar to Saccharomyces cerevisiae YJL011C RPC17 RNA polymerase III subunit C17 OS=Geotrichum candidum GN=BN980_GECA23s00626g PE=4 SV=1
UniRef50_A0A0J9XJF761.11%1261e-50Similar to Saccharomyces cerevisiae YJL011C RPC17 RNA polymerase III subunit C17 n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XJF7_GEOCN
A0A060TB78_BLAAD46.09%1284e-36ARAD1B13618p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B13618g PE=4 SV=1
A0A1E3PHN6_9ASCO44.70%1328e-31Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52705 PE=4 SV=1
Q6C8D3_YARLI42.06%1262e-24YALI0D20592p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D20592g PE=4 SV=1
Q5AK30_CANAL32.58%1324e-16DNA-directed RNA polymerase III subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.3990 PE=4 SV=1
RPC9_YEAST28.12%1606e-12DNA-directed RNA polymerase III subunit RPC9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC17 PE=1 SV=2

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0707

Protein family membership

Domains and repeats

  1. Domain
  2. Domain
1 20 40 60 80 100 120 140 140

Detailed signature matches

  1. Family IPR005574
    RNA polymerase II, Rpb4
    1. PF03874 (RNA_pol_Rpb4)
  2. Domain IPR006590
    RNA polymerase II, Rpb4, core
    1. SM00657 (rpol4neu2)
  3. Domain IPR010997
    HRDC-like
    1. SSF47819 (HRDC-like)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:1.10.15...

Protein sequence

>MCA_05085_1
MKVEVERDAFLSDFEVLDHLNQIKESKAKLKSGPKSENLETILIELHAYLRDRPAGNEANPQTAQNISEFVANIKRFDLE
KAEVLQLINTAPQSLPVLFNVIEECDQRFSEQDMDEILQLSQQYLGVEPQPEKIEEEEAA

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated
GO:0044237 cellular metabolic process

Molecular Function

GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0003899 DNA-directed 5'-3' RNA polymerase activity

Cellular Component

None predicted.