Protein
MCA_05085_1
Length
140 amino acids
Description: putative RNA polymerase II subunit Rpb4
Browser: contigD:329780-330386+
RNA-seq: read pairs 309, FPKM 27.1, percentile rank 49.8% (100% = highest expression)
Protein function
Annotation: | putative RNA polymerase II subunit Rpb4 | ||
---|---|---|---|
EGGNOG: | 0PPJN | RNA polymerase III subunit | |
SGD closest match: | S000003548 | RPC17 | DNA-directed RNA polymerase III subunit RPC9 |
CGD closest match: | CAL0000193163 | orf19.3990 | DNA-directed RNA polymerase III subunit |
Protein alignments
%id | Aln length | E-value | ||
---|---|---|---|---|
MIA_03822_1 | 69.05% | 126 | 6e-57 | MIA_03822_1 |
A0A0J9XJF7_GEOCN | 61.11% | 126 | 6e-54 | Similar to Saccharomyces cerevisiae YJL011C RPC17 RNA polymerase III subunit C17 OS=Geotrichum candidum GN=BN980_GECA23s00626g PE=4 SV=1 |
UniRef50_A0A0J9XJF7 | 61.11% | 126 | 1e-50 | Similar to Saccharomyces cerevisiae YJL011C RPC17 RNA polymerase III subunit C17 n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XJF7_GEOCN |
A0A060TB78_BLAAD | 46.09% | 128 | 4e-36 | ARAD1B13618p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B13618g PE=4 SV=1 |
A0A1E3PHN6_9ASCO | 44.70% | 132 | 8e-31 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52705 PE=4 SV=1 |
Q6C8D3_YARLI | 42.06% | 126 | 2e-24 | YALI0D20592p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D20592g PE=4 SV=1 |
Q5AK30_CANAL | 32.58% | 132 | 4e-16 | DNA-directed RNA polymerase III subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.3990 PE=4 SV=1 |
RPC9_YEAST | 28.12% | 160 | 6e-12 | DNA-directed RNA polymerase III subunit RPC9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC17 PE=1 SV=2 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0707
Protein family membership
- RNA polymerase II, Rpb4 (IPR005574)
Domains and repeats
-
Domain
-
Domain
1
20
40
60
80
100
120
140
140
Detailed signature matches
no IPR
Unintegrated signatures
Protein sequence
>MCA_05085_1 MKVEVERDAFLSDFEVLDHLNQIKESKAKLKSGPKSENLETILIELHAYLRDRPAGNEANPQTAQNISEFVANIKRFDLE KAEVLQLINTAPQSLPVLFNVIEECDQRFSEQDMDEILQLSQQYLGVEPQPEKIEEEEAA
GO term prediction
Biological Process
GO:0006351 transcription, DNA-templated
GO:0044237 cellular metabolic process
Molecular Function
GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
Cellular Component
None predicted.