Protein
MCA_05017_1
Length
374 amino acids
Gene name: CSL4
Description: Exosome complex component CSL4
Browser: contigD:122682-123807-
RNA-seq: read pairs 836, FPKM 27.5, percentile rank 50.3% (100% = highest expression)
Protein function
| Annotation: | CSL4 | Exosome complex component CSL4 | |
|---|---|---|---|
| KEGG: | K07573 | CSL4 | exosome complex component CSL4 |
| EGGNOG: | 0PM0J | CSL4 | Exosome complex subunit Csl4 |
| SGD closest match: | S000005176 | CSL4 | Exosome complex component CSL4 |
| CGD closest match: | CAL0000197512 | orf19.1026 | Exosome non-catalytic core subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9XKY4_GEOCN | 65.05% | 103 | 7e-40 | Similar to Saccharomyces cerevisiae YNL232W CSL4 Exosome non-catalytic core component OS=Geotrichum candidum GN=BN980_GECA26s00516g PE=4 SV=1 |
| A0A167F9Q0_9ASCO | 63.46% | 104 | 5e-39 | Csl4p OS=Sugiyamaella lignohabitans GN=CSL4 PE=4 SV=1 |
| UniRef50_A0A167F9Q0 | 63.46% | 104 | 1e-35 | Csl4p n=3 Tax=Saccharomycetales TaxID=4892 RepID=A0A167F9Q0_9ASCO |
| A0A1E3PRJ9_9ASCO | 56.80% | 125 | 3e-36 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_56369 PE=4 SV=1 |
| CSL4_YEAST | 56.48% | 108 | 5e-33 | Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSL4 PE=1 SV=1 |
| A0A1D8PD51_CANAL | 48.84% | 129 | 5e-32 | Exosome non-catalytic core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.1026 PE=4 SV=1 |
| Q6CHR4_YARLI | 53.98% | 113 | 3e-30 | YALI0A05995p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A05995g PE=4 SV=1 |
| MIA_04737_1 | 59.34% | 91 | 3e-29 | MIA_04737_1 |
| A0A060TD90_BLAAD | 58.33% | 96 | 4e-27 | ARAD1D46046p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D46046g PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0237
Protein family membership
- Exosome complex component CSL4 (IPR019495)
Domains and repeats
-
Domain
1
50
100
150
200
250
300
374
Detailed signature matches
no IPR
Unintegrated signatures
Protein sequence
>MCA_05017_1 MSIPGYVLPGQIICPIFEKITTDSGITIRKFIPGNGVGLSQEDTSNTVVLRANKLGKVGITQVAEEEKSEETEGTVKPKS SKGPKIATFKVFINDRFTTCSAAPNPQSGEVRASPVVTQSVPILPAIGSIVLARVTKLTLRQANVEIISIQSSEPDSVIS TQDQKNAVKFSSDIPVSKESAVGVNGLVRGVVPSSQVTTSGSGIPTSFSFLSSSSISFVSPSTVSSYSTKTASSKNRNAQ LTEALTSQYTFQGTPQIPDSTFVSNAVSSTEIGEGFGGIIRLQDVRLTQRDTVKISECFQPGDIVKALVISLGDGTNYYL STARNDLGVILAKAKGSGKRMVPVDWQYMKTIVPENQADKIVEEIEMRKCAKPL
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003723 RNA binding
Cellular Component
GO:0000178 exosome (RNase complex)