Protein

MCA_04993_1

Length
1,342 amino acids

Browser: contigD:48471-52500-

RNA-seq: read pairs 804, FPKM 7.4, percentile rank 21.3% (100% = highest expression)

Protein function

EGGNOG:0PKWDPGUG_04671protein required for cell viability
SGD closest match:S000004797RTP1RNA polymerase II assembly factor RTP1
CGD closest match:CAL0000194737orf19.7159Uncharacterized protein

Protein alignments

%idAln lengthE-value
MIA_04734_130.17%13263e-153MIA_04734_1
A0A0J9XL36_GEOCN25.71%13343e-71Similar to Saccharomyces cerevisiae YMR185W RTP1 Protein required for the nuclear import and biogenesis of RNA pol II OS=Geotrichum candidum GN=BN980_GECA25s00967g PE=4 SV=1
UniRef50_A0A0J9XL3625.71%13346e-68Similar to Saccharomyces cerevisiae YMR185W RTP1 Protein required for the nuclear import and biogenesis of RNA pol II n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XL36_GEOCN
A0A1E3PMM7_9ASCO29.23%6261e-49Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_50115 PE=4 SV=1
A0A167CHW3_9ASCO25.16%6165e-33Rtp1p OS=Sugiyamaella lignohabitans GN=RTP1 PE=4 SV=1
A0A060T0R7_BLAAD31.12%2864e-21ARAD1C15114p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C15114g PE=4 SV=1
A0A1D8PRI9_CANAL24.73%3725e-10Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.7159 PE=4 SV=1
RTP1_YEAST24.74%2872e-09RNA polymerase II assembly factor RTP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTP1 PE=1 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.2898

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 200 400 600 800 1000 1200 1342

Detailed signature matches

  1. Domain IPR019451
    RNA polymerase II assembly factor Rtp1, C-terminal
    1. PF10363 (RTP1_C1)
  2. Domain IPR016024
    Armadillo-type fold
    1. SSF48371 (ARM repeat)
  3. Domain IPR011989
    Armadillo-like helical
    1. G3DSA:1.25.10.10
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. TMhelix
  3. mobidb-lite (disord...)

Protein sequence

>MCA_04993_1
MKKSTTLTRNIDNTENNNKLQYDPNKINIRYTSPLDKLFERLDEILKSSIVQNPNKKIIPSTKTFTRTQLLYNALSESEI
AHTKDNILSITDYRSQEPSFNSIAEDHDFLVIAFFCQSLIKIQHFLEEIKTSPESKTEPNNKNKTNPEMIAISLNDMKTL
NIILNIIIIDGIYPCLTPGVGIPINLRIKQSNMQQKGIIQPTTDNGPDNISENSKFLRLAYILEQTLIPCITKKENGHSD
DLRNIILISSYFPDLISVAAELAFNPKNRELNLTRYSQESDFNSEENLKRKLSELYKNYNFILDQIDTYSLYLNLTSLIR
PKSPKWLLSNITKSLASIPVRRPHNGVSALIEFISGIREMSASNKGVDINNLDKAIQILKSVPASFLQSQAKKIQYYKLI
GNQLISIIGSPQNILQRPMFLSATIHIIEKLYDQKREMILYGIENQLIETINPTLPETLETTQTKNLLVTGPSLQQALNA
FSSLVNSHQLVPLTQSIGKRIFVALWSLLCFSKKHELALTPTTKEDTEKNNLFDQVKYLLVNLIISQPKNEDKEGVQKLL
VKYFLAPSGSPHTWKYAIEPEISASKGNICIRKCNYSDTFETDGITNSLHQSIQSNNFINLESQLQLFDDIDFRISIFLQ
DILGGLKQYESEVSDSEEKNLQAEFVSSLFVYLLKEWLQFRQLSDSSNEPIKNPISEISLLPLEESQEKADDTINALVNA
KLLQGIYEGHKEDLLKFPLQLLLIIHTTLEEYATVLEKKFGDNSDSFKNKPIIDDTIEEFTIKSDKNSILDSLKFIHSEI
ESSSNMDSDEMDDLPKSIKNLVVLDDESKTDTKTNSNNQQPIAGNEEPLEDEDDNSIEIVEICISLLFAITDDIFETASA
KQAIDKNIISQIKTLEAILPQLEFIVSNFDVLPESHQSGTSLIKEKIITCQTSIQNVLTTYLPDYDSETHEKGNNNSLIK
DEYDSFISESKAKLSRAVKLLQDPLIPVQANALYILKTLIDSTYLGNSKSKSNTVSSKTETINPVVRENWKLILEIYLSK
IQSDDSFIYLNAIKGLCALCEKFIKLRYFPNNDADKTKKENDTDFDVLIHLLQLYISPTTFAVKKKEPIKQSFSADLDSS
TEQQLRIGEVLLQLISRLKSKSLFKDRVVNVIVSPIIEMIKPTSSILKQNSKNINILRMSAISILSSCFDGPLSYWIMEN
NHWTWEVFDCALGILKSEIIHVGLEPSYKKEMNEDEKIIKDNIQVEKEAKQSGIILVRRAALSLLASIFKSMPDKHALTR
LLFSNSIKSDPNQIKISAAFSRDNNDPFGLISQLEIASQDRDPIIRSNAIETMRIINDLEIQ

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005488 binding

Cellular Component

None predicted.