MCA_04466_1

Protein

Length

176 amino acids

Gene name: RPL6B

Description: 60S ribosomal protein L6-B

Browser: contigC:3121008-3121917-

RNA-seq: read pairs 63096, FPKM 4404.6, percentile rank 99.4% (100% = highest expression)

Protein function

Annotation:		RPL6B	60S ribosomal protein L6-B
KEGG:	K02934	RP-L6e	large subunit ribosomal protein L6e
EGGNOG:	0PJFV	FG01016.1	60S ribosomal protein L6
SGD closest match:	S000004440	RPL6B	60S ribosomal protein L6-B
CGD closest match:	CAL0000181737	RPL6	60S ribosomal protein L6

Protein alignments

	%id	Aln length	E-value
MIA_01169_1	86.86%	175	1e-75	MIA_01169_1
A0A1E3PK79_9ASCO	71.68%	173	1e-55	60S ribosomal protein L6 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_46451 PE=3 SV=1
UniRef50_G8BQB7	63.89%	180	1e-51	60S ribosomal protein L6 n=23 Tax=Fungi TaxID=4751 RepID=G8BQB7_TETPH
A0A1D8PCX8_CANAL	70.93%	172	3e-53	60S ribosomal protein L6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPL6 PE=3 SV=1
RL6B_YEAST	64.97%	177	3e-53	60S ribosomal protein L6-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL6B PE=1 SV=4
A0A060TG34_BLAAD	68.02%	172	1e-52	ARAD1D27720p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D27720g PE=4 SV=1
A0A0J9XDT1_GEOCN	73.41%	173	2e-52	Similar to Saccharomyces cerevisiae YML073C RPL6A N-terminally acetylated protein component of the large (60S) ribosomal subunit OS=Geotrichum candidum GN=BN980_GECA11s02375g PE=4 SV=1
Q6C4C8_YARLI	64.91%	171	6e-48	60S ribosomal protein L6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E27830g PE=3 SV=1
A0A1E4TAL3_9ASCO	51.16%	172	3e-38	Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_128055 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1111

Protein family membership

60S ribosomal protein L6E (IPR000915)

Domains and repeats

Domain
30 - 154
Ribosomal protein L2 domain 2 (IPR014722)
Domain
31 - 123
Translation protein SH3-like domain (IPR008991)

1 20 40 60 80 100 120 140 160 176

Detailed signature matches

IPR000915

60S ribosomal protein L6E
1. PF01159 (Ribosomal_L6e)
  
  70 - 176
  
  Pfam
  PF01159 (Ribosomal_L6e)
IPR014722

Ribosomal protein L2 domain 2
1. G3DSA:2.30.30.30
  
  30 - 154
  
  GENE3D
  G3DSA:2.30.30.30 (G3DSA:2.30.30.30)
IPR008991

Translation protein SH3-like domain
1. SSF50104 (Translati...)
  
  31 - 123
  
  SUPERFAMILY
  SSF50104 (Translation proteins SH3-like domain)

no IPR

Unintegrated signatures

cd13156 (KOW_RPL6)

25 - 176

CDD
cd13156 (KOW_RPL6)

Residue annotation

RNA binding site c...

25N

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

27T

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

43A

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

44G

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

45R

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

46F

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

47R

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

49K

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

60N

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

61T

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

68F

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

69K

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

70V

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

71N

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

72G

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

74P

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

76R

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

77R

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

78V

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

79N

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

81R

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

82Y

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

107S

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

131K

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

134R

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

135V

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

157K

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

160A

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

161T

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

162S

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

166K

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

167N

RNA binding site
25N, 27T, 43A, 44G, 45R, 46F, 47R, 49K, 60N, 61T, 68F, 69K, 70V, 71N, 72G, 74P, 76R, 77R, 78V, 79N, 81R, 82Y, 107S, 131K, 134R, 135V, 157K, 160A, 161T, 162S, 166K, 167N
CDD
cd13156 (KOW_RPL6)

Protein sequence

>MCA_04466_1
MTVRGAKNWYPTEDLVKKSKPEAQNPTKLRASLVPGTILIILAGRFRGKRVVYLKPLEDNTLLVSGPFKVNGVPLRRVNP
RYVIATSTSIDVSKVDVSKYDVSFFASEKKDKNAATEEEFFGDKKEKKEVKAERVAAQKEVDAALLAEIKKQPLLKKYIA
TSFSLKNGDKPHLLKF

GO term prediction

Biological Process

GO:0006412 translation

Molecular Function

GO:0003735 structural constituent of ribosome

Cellular Component

GO:0005622 intracellular
GO:0005840 ribosome

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Entry type

Status

Per-residue features