Protein
MCA_04435_1
Length
1,233 amino acids
Gene name: SMC3
Description: Structural maintenance of chromosomes protein 3
Browser: contigC:3042185-3046086+
RNA-seq: read pairs 1128, FPKM 11.3, percentile rank 28.0% (100% = highest expression)
Protein function
Annotation: | SMC3 | Structural maintenance of chromosomes protein 3 | |
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KEGG: | K06669 | SMC3 | structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6) |
EGGNOG: | 0PHGY | SMC3 | Chromosome segregation protein |
SGD closest match: | S000003610 | SMC3 | Structural maintenance of chromosomes protein 3 |
CGD closest match: | CAL0000193720 | SMC3 | Structural maintenance of chromosomes protein |
Protein alignments
%id | Aln length | E-value | ||
---|---|---|---|---|
A0A0J9XBR7_GEOCN | 52.03% | 1234 | 0.0 | Structural maintenance of chromosomes protein OS=Geotrichum candidum GN=BN980_GECA07s02122g PE=3 SV=1 |
MIA_03652_1 | 51.21% | 1238 | 0.0 | MIA_03652_1 |
UniRef50_A0A1E3Q5T1 | 45.90% | 1231 | 0.0 | Structural maintenance of chromosomes protein n=2 Tax=Saccharomycetales TaxID=4892 RepID=A0A1E3Q5T1_LIPST |
A0A1E3PLP0_9ASCO | 45.22% | 1245 | 0.0 | Structural maintenance of chromosomes protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_50270 PE=3 SV=1 |
Q6CI88_YARLI | 40.21% | 1246 | 0.0 | Structural maintenance of chromosomes protein OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A00616g PE=3 SV=1 |
A0A060TGN9_BLAAD | 40.93% | 1158 | 0.0 | ARAD1D32186p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D32186g PE=4 SV=1 |
A0A167DW74_9ASCO | 40.58% | 1163 | 0.0 | Cohesin subunit SMC3 OS=Sugiyamaella lignohabitans GN=SMC3 PE=4 SV=1 |
A0A1D8PJK7_CANAL | 38.36% | 1280 | 0.0 | Structural maintenance of chromosomes protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SMC3 PE=3 SV=1 |
SMC3_YEAST | 35.78% | 1266 | 0.0 | Structural maintenance of chromosomes protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMC3 PE=1 SV=1 |
A0A1E4TK84_9ASCO | 34.70% | 1245 | 0.0 | Structural maintenance of chromosomes protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_42779 PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1632
Predicted cleavage: 35
Protein family membership
- Structural maintenance of chromosomes protein (IPR024704)
Domains and repeats
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Domain
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Domain
1
200
400
600
800
1000
1233
Detailed signature matches
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PIRSF005719 (SMC)
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SSF52540 (P-loop co...)
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PF02463 (SMC_N)
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![Unintegrated signatures Unintegrated signatures](resources/images/ico_type_uni_small.png)
Unintegrated signatures
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cd03272 (ABC_SMC3_euk)
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mobidb-lite (disord...)
Residue annotation
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Walker A/P-loop cd...
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ATP binding site c...
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Q-loop/lid cd03272
Protein sequence
>MCA_04435_1 MYIKQITIQGFKSYKNQTITDPFSPHHNVVVGRNGSGKSNFFAAIRFVLNDGDVYHNMNREFRQSLLHEGSGSGIVTAYV EIAIDNSDNRFVGYSDTVTIRRTVGVKKDEYSIDRKSATRNDVKSLLESGGFSQSNPYYIVPQGRVTALTNAKDSERLEL LKEVAGTKVYDDRRAESIKVLNESEIKHKTIEESLQFIRERLEELEKEKEELKEYQVIDRQKRSLDYTLLDRELQEINET LESLKEERENGIALNNQRLEQFNSLEEHVNEIESTLSKLKNDTRLLGVERARLKQELKLKIKDKARREVECDQLERSAAS SREAIAQKRQEISNLTQLITDKKAEFDSIQPQLLELKAREQELRQEVQNLESAKNILLSKQGRNYRFNSQQERDLWLQNE LAGLSSNIAELESVNSSSKKSLADLEQQLAAVRSSIDEIKAQGNSKAQLLKQQQELLDEAESEYLALDNERKSLWSEEQR ANSVLENLQDDIKQSQRAAFSTLSRAQSSGLKAVKRISNKLGLNGVYGTIAELIDVAPEFKLATEITAGNSLLHVVVDDE ETASKIMAELLREKSGRVTFMPLNRLSPRTPNYPTSDDVTPLINHLQYDQIFDPAVRQIFGNTIVVRNLEMGSQIAHNND LNAITLEGDRVNTKGVMTGGFYNIRKSRLTAFQKLKEMNDLFSVKEEEYRTIQKRIRELDERINQSRSNKYKIESEIQTL RNSLSPLNNLRQSKTIEESQIKEMIQEVQQSIQDSEINIQNYTNQKNSYLAELQSPFDQVLSDEEIQQLREINQQLPRKV KQLNDLSMERLNIEQRSTQLDVEIHQDLEFRVEQLTSSLENNALDEDDEMPQDLGGRDPGHALTLARQQLQNLVENIASI EEKLESLEADIERSNAEIAETEKQLSIATETRFKIGRSIESLHKQMEKSIAKNTLLTERHDEVQRKIRELGVLPPNAFTE FEGTPSEQIVNKLRKISDKLKKFSHVNKKAVEQYNNFTKQEEKLEDRKRELETSHESIEQLIHTLDMRKDEAIDRTFKQV SKAFTEIFEKLVPGGKGELIMRRKHDAVNGNNRGNDYESGSDDEEEAQEQQTRRRGNRNPRNTIVSVDSYVGVGISVSFN SKEDDQQRIEQLSGGQKSLCALTLIFAIQQSDPAPFYLFDEIDANLDTQYRTSVAAMIHELARSAQFICTTFRPEMLQVA DKFYGVSFENRMSTISTIDKEHALTFIEGYQAR
GO term prediction
Biological Process
GO:0051276 chromosome organization
Molecular Function
GO:0005515 protein binding
GO:0005524 ATP binding
Cellular Component
GO:0005694 chromosome