Protein

MCA_03981_1

Length
728 amino acids


Gene name: TOP3B

Description: DNA topoisomerase 3

Browser: contigC:1689733-1691992-

RNA-seq: read pairs 299, FPKM 5.1, percentile rank 17.5% (100% = highest expression)

Protein function

Annotation:TOP3BDNA topoisomerase 3
KEGG:K03165TOP3 DNA topoisomerase III [EC:5.99.1.2]
EGGNOG:0PJ78TOP3DNA Topoisomerase
SGD closest match:S000004224TOP3DNA topoisomerase 3
CGD closest match:CAL0000178060orf19.5934DNA topoisomerase

Protein alignments

%idAln lengthE-value
MIA_01657_159.32%6760.0MIA_01657_1
A0A0J9XKM4_GEOCN49.86%7400.0DNA topoisomerase OS=Geotrichum candidum GN=BN980_GECA24s00087g PE=3 SV=1
UniRef50_A0A0J9XKM449.86%7400.0DNA topoisomerase n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XKM4_GEOCN
A0A060T6F5_BLAAD47.97%6650.0DNA topoisomerase OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B11726g PE=3 SV=1
Q5ANG9_CANAL46.76%6630.0DNA topoisomerase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.5934 PE=3 SV=1
TOP3_YEAST45.40%6850.0DNA topoisomerase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOP3 PE=1 SV=1
Q6C0R0_YARLI43.69%6500.0DNA topoisomerase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F22495g PE=3 SV=1
A0A1E4TD21_9ASCO43.67%6645e-169DNA topoisomerase OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_140658 PE=3 SV=1
A0A1E3PHR5_9ASCO48.33%4781e-150DNA topoisomerase OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_70460 PE=3 SV=1
A0A161HJL6_9ASCO53.67%3006e-105DNA topoisomerase OS=Sugiyamaella lignohabitans GN=TOP3 PE=3 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.7397
Predicted cleavage: 26

Protein family membership

None predicted.

Domains and repeats

1 100 200 300 400 500 600 728

Detailed signature matches

    1. PF01751 (Toprim)
    2. SM00493 (toprim5)
    3. PS50880 (TOPRIM)
    1. cd03362 (TOPRIM_Top...)
    1. SSF56712 (Prokaryot...)
    1. PR00417 (PRTPISMRASEI)
    2. PF01131 (Topoisom_bac)
    3. cd00186 (TOP1Ac)
    1. SM00436 (topIban2)
    1. SM00437 (topIaneu2)
Unintegrated signatures no IPR
Unintegrated signatures
  1. mobidb-lite (disord...)

Residue annotation

  1. active site cd03362
  2. putative interdoma...
  3. putative metal-bin...
  4. putative nucleotid...
  5. domain I cd00186
  6. DNA binding groove...
  7. phosphate binding ...
  8. domain II cd00186
  9. domain III cd00186
  10. nucleotide binding...
  11. catalytic site cd0...
  12. domain IV cd00186

Protein sequence

>MCA_03981_1
MKILCVTEKPSVAKGVVGALSGGRYQTRNSRNKYIKNYDFDYTFPQWGRCSVTVTSVLGHLNSVDVVDPQLTSWQVDPGL
LFNTRLKTIVPDSNKDVVSNIQAESRNADYLYIWTDNDREGEHIGYEILDAARKTNPRLTDEYVKRAVFNNLDPGHVKRA
AYNPRDLDFKTIAAVQTRIEIDFRIGTALTRFQTVELQKRMAQFQGKVVSYGPCQFPTLGFIVDQYKRVKNFVSEKFWYI
SMTVKIPPTIMAQIRLESEAQDAANDSSKRKKKKISDILQFKWSRYHLFDQLAVTIFFDRCVQSGDKAIVHDVIEKPTTC
YRPLPLTTVELQKVCSRAFRGMSAKQVLDIAEKLYNKGFISYPRTETDVFDPSVDLKSLVSKQFNSPEWGNYAKDLLDEG
LSRRPGAPTFTTPRKGKHNDAAHPPIHPIIYASRSVLTADEWKVYEFVARRFLACCSPDAKGSRTTIILDWAQERFLTSG
LIVLERNFLDVYYPYQSWESSATQIPRDMFQRGQEIKIHTANLESGDTSPPKYLTEPDLIALMDANGIGTDATMADHIET
ILKREYAVKYKESQSSTAIPVLLPSALGYGLVEGYDQIGFEMSLSKPFLRKEMEELMKNIEQGRMTKQQVLRDTINKYFK
VYGIAKRNQNILIECTKNRIEMAAQSTQNSQGVVQNSTSSNTSTSGTTRSTSTRSASTRGARGTRGTRVSRRGSTTRRRG
RSTSSRGS

GO term prediction

Biological Process

GO:0006265 DNA topological change

Molecular Function

GO:0003677 DNA binding
GO:0003916 DNA topoisomerase activity

Cellular Component

None predicted.