Protein
MCA_03972_1
Length
357 amino acids
Browser: contigC:1668163-1669237+
RNA-seq: read pairs 2229, FPKM 76.9, percentile rank 74.6% (100% = highest expression)
Protein function
| KEGG: | K11090 | LA | lupus La protein |
|---|---|---|---|
| EGGNOG: | 0QDTN | FG01968.1 | RNA-binding La domain protein |
| SGD closest match: | S000002209 | LHP1 | La protein homolog |
| CGD closest match: | CAL0000195360 | LHP1 | Lhp1p |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_04570_1 | 67.70% | 257 | 6e-106 | MIA_04570_1 |
| A0A0J9X7Q6_GEOCN | 65.90% | 217 | 2e-95 | Similar to Saccharomyces cerevisiae YDL051W LHP1 RNA binding protein required for maturation of tRNA and U6 snRNAs OS=Geotrichum candidum GN=BN980_GECA04s00230g PE=4 SV=1 |
| A0A167EQA2_9ASCO | 62.67% | 217 | 5e-87 | Lhp1p OS=Sugiyamaella lignohabitans GN=LHP1 PE=4 SV=1 |
| UniRef50_A0A167EQA2 | 62.67% | 217 | 1e-83 | Lhp1p n=6 Tax=Saccharomycetales TaxID=4892 RepID=A0A167EQA2_9ASCO |
| A0A060T426_BLAAD | 63.64% | 209 | 1e-85 | ARAD1C40832p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C40832g PE=4 SV=1 |
| A0A1E3PCH2_9ASCO | 57.69% | 208 | 1e-70 | La-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_84585 PE=4 SV=1 |
| Q6C5E0_YARLI | 43.88% | 237 | 2e-49 | YALI0E18854p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E18854g PE=4 SV=1 |
| LHP1_YEAST | 39.53% | 172 | 8e-32 | La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LHP1 PE=1 SV=2 |
| A0A1D8PE36_CANAL | 32.80% | 189 | 5e-19 | Lhp1p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=LHP1 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0092
Protein family membership
- Lupus La protein (IPR002344)
Domains and repeats
-
Domain
1
50
100
150
200
250
300
357
Detailed signature matches
no IPR
Unintegrated signatures
-
-
cd12291 (RRM1_La)
-
mobidb-lite (disord...)
Residue annotation
-
RNA binding site c...
Protein sequence
>MCA_03972_1 MSEQEAAAPIVEEPKVEEPKVEESKPEESKVEESKPEESKVEESKPEESKVEESKVEEPKSEEPKSEESKPEESKPEESK TEKPKKKSNVVSDPSTLPQSSDHAEILKQVEFYFSDQNLPKDKYLSSLTKENDGWVPITTIACFGRMRRFSPFSAIVEAL KKSPELLEVSEDGELVRRKIPLVTAADEEAEEGEAKEGEDGKPRKRPESKATQAFNRSIYAKGFGEETPTTQYDLEKYFE SFAPVTQVRLRRTDDKKFKGSVFVEFAKLEDAKRFLEQDPKPMYNNTTLITMSKAAYVDMKSQEHGFNKNARGGNNRRRG GFQNNRKRRFDGKRNNRDDKKPRTEEGSSAPVAVDSK
GO term prediction
Biological Process
GO:0006396 RNA processing
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
Cellular Component
GO:0005634 nucleus
GO:0030529 intracellular ribonucleoprotein complex