Protein
MCA_03932_1
Length
548 amino acids
Browser: contigC:1524338-1526187-
RNA-seq: read pairs 990, FPKM 22.3, percentile rank 44.2% (100% = highest expression)
Protein function
| KEGG: | K12662 | PRPF4 | U4/U6 small nuclear ribonucleoprotein PRP4 |
|---|---|---|---|
| EGGNOG: | 0PGT6 | PGUG_00108 | U4 U6 small nuclear ribonucleoprotein Prp4 |
| SGD closest match: | S000006382 | PRP4 | U4/U6 small nuclear ribonucleoprotein PRP4 |
| CGD closest match: | CAL0000188618 | CAALFM_CR09480WA | U4/U6-U5 snRNP complex subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_02344_1 | 54.95% | 555 | 0.0 | MIA_02344_1 |
| A0A0J9XBR4_GEOCN | 46.48% | 540 | 2e-149 | Similar to Saccharomyces cerevisiae YPR178W PRP4 Splicing factor, component of the U4/U6-U5 snRNP complex OS=Geotrichum candidum GN=BN980_GECA08s03464g PE=4 SV=1 |
| UniRef50_A0A1E3Q8Z5 | 40.00% | 565 | 5e-117 | Uncharacterized protein n=2 Tax=Saccharomycetales TaxID=4892 RepID=A0A1E3Q8Z5_LIPST |
| A0A060T2W0_BLAAD | 37.52% | 557 | 1e-110 | ARAD1C36036p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C36036g PE=4 SV=1 |
| A0A1E3PJ80_9ASCO | 41.37% | 498 | 2e-105 | WD40 repeat-like protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_50788 PE=4 SV=1 |
| A0A167CYV2_9ASCO | 42.42% | 422 | 2e-95 | Prp4p OS=Sugiyamaella lignohabitans GN=PRP4 PE=4 SV=1 |
| Q6C4B6_YARLI | 37.40% | 516 | 2e-96 | YALI0E28226p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E28226g PE=4 SV=1 |
| PRP4_YEAST | 31.95% | 532 | 6e-83 | U4/U6 small nuclear ribonucleoprotein PRP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP4 PE=1 SV=1 |
| A0A1E4TE07_9ASCO | 34.03% | 523 | 1e-79 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_99491 PE=4 SV=1 |
| A0A1D8PU02_CANAL | 32.15% | 451 | 2e-60 | U4/U6-U5 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR09480WA PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0873
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Repeat
-
Repeat
1
50
100
150
200
250
300
350
400
450
500
548
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
-
cd00200 (WD40)
-
mobidb-lite (disord...)
Residue annotation
-
structural tetrad ...
Protein sequence
>MCA_03932_1 MHPSRISNLNHTKPNDNTSIGIPLSQIPLSHNNTVASRQAQEFQETHARNQVAKSFAIPTNDLDVRARLRSFGEPITLFG EDKADRRNRLRDVMLKRYESGLPVGDNIDLQRESSQDVEMGDSDEDEDEEDEDFYTPGTTELLEARRKIYLQSIKQSHKR TSYQRIISKFPTATHVAFRRKFSVEQLGNYTLIGSQIVSARPASMTRFNCTSSQLAVAAWSGEVKIFSAPSLEPSQQFPS TITVGTDKPSIAWSTTNDSQLAVGAADGKISLYDLGNTHDPMETDEVKPKQNSPTPIQNLEGHEQRVGRLAFHPNGDYLG SASFDLTWRLWDINTGTELLTQEGHSKEVFCIAFHPDGSLCGTAGLDNIARIWDIRTGRGIMSMLGHARPIYGIDFSSNG YHVITGSADATIKVWDLRQRSELFTIPAHKSVISDVKYYSDSASGGYLSKLLERAAADPEKSIDEDDMAQQNEWLSHSGS FFVSSSYDRTVKIWNSDTWTLAGTLLGHSDKVMSVDVSSIDHENSNNEVLIASSGWDRTVKLWNKDEF
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.