Protein
MCA_03887_1
Length
415 amino acids
Browser: contigC:1410286-1411668-
RNA-seq: read pairs 1595, FPKM 47.4, percentile rank 64.2% (100% = highest expression)
Protein function
| KEGG: | K13201 | TIA1 | nucleolysin TIA-1/TIAR |
|---|---|---|---|
| EGGNOG: | 0PIVD | FG05417.1 | Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1 |
| SGD closest match: | S000004961 | PUB1 | Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 |
| CGD closest match: | CAL0000199799 | orf19.7368 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| UniRef50_L8FWG0 | 46.55% | 348 | 4e-100 | Uncharacterized protein n=20 Tax=leotiomyceta TaxID=716546 RepID=L8FWG0_PSED2 |
| MIA_02573_1 | 79.55% | 176 | 7e-98 | MIA_02573_1 |
| A0A0J9X6Z6_GEOCN | 71.35% | 178 | 8e-91 | Similar to Saccharomyces cerevisiae YNL016W PUB1 Poly (A)+ RNA-binding protein, abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs OS=Geotrichum candidum GN=BN980_GECA04s01594g PE=4 SV=1 |
| A0A060T2H2_BLAAD | 58.99% | 178 | 5e-70 | ARAD1A01672p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A01672g PE=4 SV=1 |
| A0A1E3PK19_9ASCO | 59.66% | 176 | 2e-67 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_41775 PE=4 SV=1 |
| A0A1D8PKD0_CANAL | 57.69% | 182 | 1e-65 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.7368 PE=4 SV=1 |
| Q6CCS0_YARLI | 49.72% | 181 | 3e-53 | YALI0C07040p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C07040g PE=4 SV=1 |
| PUB1_YEAST | 49.14% | 175 | 5e-52 | Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUB1 PE=1 SV=4 |
| A0A167EEF7_9ASCO | 60.19% | 103 | 2e-38 | Pub1p OS=Sugiyamaella lignohabitans GN=PUB1 PE=4 SV=1 |
| A0A1E4THK5_9ASCO | 25.75% | 334 | 2e-25 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_25868 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1519
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
300
350
415
Detailed signature matches
-
-
SM00361 (rrm2_1)
-
no IPR
Unintegrated signatures
-
-
cd12619 (RRM2_PUB1)
-
mobidb-lite (disord...)
Protein sequence
>MCA_03887_1 MTDSDQNAVNSAAEQQSVAADSSTATNGTANNSNTSQQSSSSQQTQSGADTPETSASTPAPANASQGGREINKKVLYVGN IDQQVAEDTLNDVFKTVGNVVSIKIFPDKNKRGFNYAFIEYEDQAGAELAYRSLDGRPINQSEIKINWAYQSLSASKAPE LFNVFVGDLSSEVNDDFLAKAFSKFGSMVEAHVMWDMTTGRSRGYGFVTFRNQEDAQNAIQSMNGEWLGSRTIRCNWASQ KQQQQQGMPYNNHQQQIYHQQSYGSGPVGSQQGQGQMVGDQQQGQYMNQPAAVGSQSQAMVNPMGMGVVNPSPMYDIIVR QAPNWQTTVYLGNIPNYAIPNDLLPVLQNFGYVVDIKYQQEREYAFIKYDTHEHAAVAISQLSGAQFSGRTLRCGWGKDR HQGNHHMNYGRQYNR
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.