Protein
MCA_03729_1
Length
609 amino acids
Description: putative subunit of DNA-directed RNA polymerase III
Browser: contigC:917307-919137-
RNA-seq: read pairs 1101, FPKM 22.3, percentile rank 44.2% (100% = highest expression)
Protein function
| Annotation: | putative subunit of DNA-directed RNA polymerase III |
|---|
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_00913_1 | 40.45% | 445 | 2e-69 | MIA_00913_1 |
| A0A0J9X6R1_GEOCN | 36.14% | 249 | 2e-30 | Similar to Saccharomyces cerevisiae YDL150W RPC53 DNA-directed RNA polymerase III OS=Geotrichum candidum GN=BN980_GECA04s00615g PE=4 SV=1 |
| UniRef50_A0A0J9X6R1 | 36.14% | 249 | 4e-27 | Similar to Saccharomyces cerevisiae YDL150W RPC53 DNA-directed RNA polymerase III n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X6R1_GEOCN |
| A0A167EJD9_9ASCO | 35.24% | 210 | 2e-20 | Rpc53p OS=Sugiyamaella lignohabitans GN=RPC53 PE=4 SV=1 |
| A0A060T6V2_BLAAD | 28.69% | 251 | 4e-19 | ARAD1C16566p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C16566g PE=4 SV=1 |
| Q6C321_YARLI | 53.52% | 71 | 3e-13 | YALI0F03300p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F03300g PE=4 SV=1 |
| A0A1E3PNE0_9ASCO | 29.28% | 222 | 2e-07 | Uncharacterized protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_81592 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1267
Predicted cleavage: 19
Protein family membership
- DNA-directed RNA polymerase III subunit RPC4 (IPR007811)
Domains and repeats
None predicted.
Detailed signature matches
-
-
PF05132 (RNA_pol_Rpc4)
-
no IPR
Unintegrated signatures
-
mobidb-lite (disord...)
Protein sequence
>MCA_03729_1 MPPKPPPQRNITNRLETPSSTRLPTLGEKNIPSGLTARSVTPATVTNPAATVNVAAAALAGITSDPSSSSSTSSPASASS STQPKRPTFLPKQVARRSKAERERSVPSAAIKLPTTETKPSISNSRFGGPGGSRGGRSDRGRGGSSSSARGGGRGGRGGR GGRGGRSRFEPIQSQALGAFSSLEAANWHGMQRARAIEINPDGLLADSKNNLRYLSETPGATSSGTAGDDEDEEDEDFDP NSFNMTRATGTDMDGFFPVRPVRDPENKGHNGGGGADEVAGQIRFDSQEFDGDDDIVEINIEEEEEEENNDKEGDTLMSD IVTTTTTEEEGIDPNLISIKTEQEQQDQEDRKSTDLDQLLNDYKNIQLQKSTTIRQSRSATPFIPSQKAKGYISPEEMVE LKRVARDHRAIIREFDIDTNKTNHHFNSTTSTETQNEQDDVEMKDGEEQEKSKEIEKKLFFFQMPIISPEFESSENNENQ QKQEKVVTKPKQQPASSQLSRAVALSSGAISSTNNKSNSIASSNDELYNTDLEFLKKQYPEGQIGKLRVHKSGRLTMVMG SSVVMEVSQGTLSNFLQDVVVLDPQNQKALLIGQVSRKMVVTPDISSMI
GO term prediction
Biological Process
GO:0006383 transcription from RNA polymerase III promoter
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
Cellular Component
GO:0005666 DNA-directed RNA polymerase III complex