Protein

MCA_03449_1

Length
1,057 amino acids

Browser: contigC:2423-5597+

RNA-seq: read pairs 646, FPKM 7.5, percentile rank 21.5% (100% = highest expression)

Protein function

KEGG:K10848ERCC4 DNA excision repair protein ERCC-4 [EC:3.1.-.-]
EGGNOG:0PG6FPGUG_01499DNA repair protein
SGD closest match:S000005943RAD1DNA repair protein RAD1
CGD closest match:CAL0000176746RAD1SsDNA endodeoxyribonuclease

Protein alignments

%idAln lengthE-value
MIA_05636_151.35%10750.0MIA_05636_1
A0A0J9X8H8_GEOCN47.66%10470.0Similar to Saccharomyces cerevisiae YPL022W RAD1 Single-stranded DNA endonuclease (With Rad10p) OS=Geotrichum candidum GN=BN980_GECA05s02034g PE=4 SV=1
UniRef50_A0A0J9X8H847.66%10470.0Similar to Saccharomyces cerevisiae YPL022W RAD1 Single-stranded DNA endonuclease (With Rad10p) n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X8H8_GEOCN
A0A1E3PKQ6_9ASCO43.94%9990.0Uncharacterized protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_82819 PE=4 SV=1
Q6CDP9_YARLI35.85%10324e-170YALI0B22242p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B22242g PE=4 SV=1
A0A167E6D5_9ASCO37.37%10495e-168SsDNA endodeoxyribonuclease RAD1 OS=Sugiyamaella lignohabitans GN=RAD1 PE=4 SV=1
A0A1D8PIP5_CANAL34.96%10473e-165SsDNA endodeoxyribonuclease OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAD1 PE=4 SV=1
A0A060TBX8_BLAAD34.38%11117e-162ARAD1B12254p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B12254g PE=4 SV=1
A0A1E4TJK1_9ASCO33.85%8956e-149Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_20121 PE=4 SV=1
RAD1_YEAST33.94%10525e-146DNA repair protein RAD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD1 PE=1 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0116

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 100 200 300 400 500 600 700 800 900 1000 1057

Detailed signature matches

  1. Domain IPR011335
    Restriction endonuclease type II-like
    1. SSF52980 (Restricti...)
  2. Domain IPR006166
    ERCC4 domain
    1. PF02732 (ERCC4)
    2. SM00891 (ERCC4_2)
  3. Domain IPR010994
    RuvA domain 2-like
    1. SSF47781 (RuvA doma...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. G3DSA:1.10.15...
  3. G3DSA:3.40.50...
  4. mobidb-lite (disord...)

Protein sequence

>MCA_03449_1
MANKDDDSLFVYSAGAEEYEDLDITERAKVVSQNTENGEHDASTLSNFPSPKDNDHDIYSYFRSNPITLSTVLPYQKRII
IEMMKNDGLLILGRGLGYLKIAANLIHALDVAGAGISPSLNTSSSFSDSNSKSSESLVIVLGLLDDELSSVFEELRELSV
IDSTNSNSYKYKPRGRRLKIINTENATTIDKRELLYSSGGMYMVTPRIFVVDLLSHVVDPKKISGIVVMHAEQVTASSTI
SFILRLFRQSNKTGFIKALSEEPEKFTGFSPLATMMKNLRVNKTFLWPRFHVSITDSLELQHLMYRNKLTGQWTKPRVVD
TKSVIEIEVSLTSAMNEIQRSLMECIEACVSEIRHMNSSLIDLDSWNLDNALSTDFDIIIRRQLNPIWHRISPKTKRITN
DLTVLRQLLANLLHFDAITFYKTLETIWISNSAGSESNKGVQSPWLDMDASEILFSIAKSRVFGTKSSNETPTEENENIY
ERVEQLPKWDQLSKILSEVWTERSINSNLNNNSEDEGPILIVCSTRSTARQISLYLRKAKEVRVSGKLFYSGSNYSKMLL
RDYYEWKRGFLKVKKELVQQPQNNTLARNTNKEDGSSHARYTSKRRRIRGGSQMTSKSFEPSSTSESNINVADNDEQELS
VLEAGNEVENSEEEENNDEMMITYIGDAYTPIDNRNLVVIKTFSNLKSNDYLNELKPSVIIMYEPDTTFVRQIEVYRSSL
PFFQVKVYFMYYGLSVEEQRYLKSVRNEKESFTKLIREKANLPIVITNDLDKETPENAFLRLSAASNHITRNAGNQILPE
NRSLVPPRVIVDHREFRSSLPSLIHSQGMTVAPVTLIVADYILSPRICVERKSIPDLISSFRDGRLYVQCEAMFRYYERV
VLLIEFDETKSFSLEPFSDKPGLNIKSKSSSNNVSLAYSSETASLIQDRIQSKLVLLLLQFPRLKVVWSMSPHHSAEIFY
DMKLADNQEPDPSRSAAIGLDSDMLVSESDKRYNHSAISILKSIPGINSKNYNKIINKVKSLQDLCKIPETDLAELIGVE
NAHKAFQFLNHDLRKKR

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003677 DNA binding
GO:0004518 nuclease activity

Cellular Component

None predicted.