Protein
MCA_03429_1
Length
371 amino acids
Gene name: RRP42
Description: Exosome complex component RRP42
Browser: contigB:4402035-4403151+
RNA-seq: read pairs 1018, FPKM 33.8, percentile rank 56.0% (100% = highest expression)
Protein function
| Annotation: | RRP42 | Exosome complex component RRP42 | |
|---|---|---|---|
| KEGG: | K12589 | RRP42 | exosome complex component RRP42 |
| EGGNOG: | 0PFWE | PGUG_04533 | 3' exoribonuclease family protein (Rrp42) |
| SGD closest match: | S000002269 | RRP42 | Exosome complex component RRP42 |
| CGD closest match: | CAL0000183621 | RRP42 | Exosome non-catalytic core subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03910_1 | 59.38% | 389 | 4e-138 | MIA_03910_1 |
| A0A0J9XBA5_GEOCN | 50.94% | 371 | 7e-111 | Similar to Saccharomyces cerevisiae YDL111C RRP42 Exosome non-catalytic core component OS=Geotrichum candidum GN=BN980_GECA08s01044g PE=4 SV=1 |
| A0A1E3PRN9_9ASCO | 45.10% | 306 | 3e-73 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_81962 PE=4 SV=1 |
| A0A167DLB6_9ASCO | 43.89% | 319 | 2e-69 | Rrp42p OS=Sugiyamaella lignohabitans GN=RRP42 PE=4 SV=1 |
| UniRef50_A0A167DLB6 | 43.89% | 319 | 5e-66 | Rrp42p n=3 Tax=Saccharomycetales TaxID=4892 RepID=A0A167DLB6_9ASCO |
| Q6C9I2_YARLI | 40.29% | 350 | 1e-67 | YALI0D11000p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D11000g PE=4 SV=1 |
| A0A060T7X1_BLAAD | 37.91% | 364 | 7e-64 | ARAD1D05632p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D05632g PE=4 SV=1 |
| A0A1D8PLY1_CANAL | 41.10% | 292 | 2e-57 | Exosome non-catalytic core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RRP42 PE=4 SV=1 |
| RRP42_YEAST | 39.71% | 277 | 1e-50 | Exosome complex component RRP42 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP42 PE=1 SV=1 |
| A0A1E4TEG2_9ASCO | 28.99% | 276 | 5e-16 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_101173 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1690
Protein family membership
None predicted.
Domains and repeats
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Domain
-
Domain
-
Domain
1
50
100
150
200
250
300
371
Detailed signature matches
Protein sequence
>MCA_03429_1 MVKLSPAEYSYLRTSLESTPPVRPDARAVSQFRPLQAATNFLPNCYGSARVRTADGGECIVGIKAKVVRTAFRHLDTNSS LEDDDFKSPELSSAGSSQIITSPDQLIKVNVDMSGTRDDDASLNITNLTLQKLLQDSSPVLTREKLRLNSRFSFMLFIDA LVISHQGNNPLNLLSLTIYLALLSTRLPKLISSTDDSAAAEIPVFDDDWSNSVPLSGSLFQDNESPTKDIDMGLWKPPLL FVFAIIGDNILIDPSIEEEAVADGGFVISWQNGKIIAPIRYLEMASASSMITSSVVASNAASILPSVRSSNEDIHNEMKA APKRVGGITLDILKNAYKLALEVGTDVSESLDLIVKLDQEEEEITGPPTMF
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.