Protein
MCA_03180_1
Length
1,071 amino acids
Description: Polyprotein of L1-like non-LTR retrotransposon Zorro 3
Browser: contigB:3563862-3567078+
RNA-seq: read pairs 138, FPKM 1.6, percentile rank 10.8% (100% = highest expression)
Protein function
Annotation: | Polyprotein of L1-like non-LTR retrotransposon Zorro 3 | ||
---|---|---|---|
EGGNOG: | 0PQVB | Reverse transcriptase (RNA-dependent DNA polymerase) | |
CGD closest match: | CAL0000185701 | FGR14 | Fgr14p |
Protein alignments
%id | Aln length | E-value | ||
---|---|---|---|---|
MIA_05328_1 | 39.92% | 1057 | 0.0 | MIA_05328_1 |
A0A167EHJ1_9ASCO | 35.34% | 1044 | 0.0 | Polyprotein of L1-like non-LTR retrotransposon Zorro 3 OS=Sugiyamaella lignohabitans GN=POL92 PE=4 SV=1 |
UniRef50_A0A167E5I2 | 32.28% | 1047 | 3e-179 | Polyprotein of L1-like non-LTR retrotransposon Zorro 3 n=7 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A167E5I2_9ASCO |
A0A1D8PSY7_CANAL | 22.46% | 285 | 3e-13 | Fgr14p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=FGR14 PE=4 SV=1 |
Q6C7P5_YARLI | 21.67% | 240 | 1e-09 | YALI0D26444p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D26444g PE=4 SV=1 |
A0A0J9XBU6_GEOCN | 34.62% | 78 | 4e-08 | Uncharacterized protein OS=Geotrichum candidum GN=BN980_GECA07s02705g PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0366
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
100
200
300
400
500
600
700
800
900
1000
1071
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
SSF56672 (DNA/RNA p...)
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cd01650 (RT_nLTR_like)
-
mobidb-lite (disord...)
Residue annotation
-
putative NTP bindi...
-
putative active si...
-
putative nucleic a...
Protein sequence
>MCA_03180_1 MVQEPHVYRIREADLRKKNNESTPNEESNPNEDNEEERFCYVPILPHEWRAYYKQDNSRRVRAITYVSKKEKFKGKIMLL DELTTRDMVAVKYKNLTIVNVYNQNNALDENEKPAIQYLRERLNEGALENFVMAGDLNLHHTEWDTNTRSNLREAREFVE WTVNRGLNLCSTPDVPTRGQYVLDLILASEDVSGSIRMEALHKPERFASDHIPLWWTVGGSKDFSDGAAASPQRLNLKKM DTEIFQKRLTVYIDLLGIPVGIPKDQGKVDQVATMLEEAVKRSMEDSAPVLRLVPKSKRYWTDELRDECRKMIEAKRLAK TSNEPSLIEEARQATETFRESFKKARRDHWNKYVSSLTGNQAWKIMKYVNPKRREKPFVQLKKPDGSYVQSIDEAREILW EKLLPEVSQGDELTLVNQKDDRWPALSPAEIEYAVQTIPDGKAPGPDGITGRILKEARKNSHFKMRFDKLLAACIHLGYH PEVWRSSTIVVIPKAGKDDYSNPKSYRPISLLKITSKVLEKIVQRRLAFLTKDILPREQFGGRRGYSAVDAVLTLVNKVK SENRTVSAMMIDVQGAFDHVKRQTLIETLVRMGLPNQAVNWVSSFMTSRRGNMVVDGAAGPEKEIKTGIPQGSPISPLLF MLYTKEMYDKIRDEGGDPIGFIDDITVTVVGNTESNANQLSRILNSCCEWAKSRSTSIDLGPKLNYIHFKKNYSRRDWDA MLVLPDGNAKKPDKTVRLLGIWLDSGLNFKEHIKKAIDKGYKKLQMIWRFGGTIKGLKGSTMRQFYLACVKSVLEYGIEV WGVRCPSSSISQIQKLQNFALRRILGAYKSTPTEVLEKEAAIPPVELNQKYSLMRKAIRLTLNLDRTNPLSEITAASDET SPVGKIKCTLRSLGLGIPSRKSILHEPPWNLDEDRAQEDTERWREIKNYNRKAYDFLLKSWQIKFNRGVKGDWYRRKTGG NQGPCTYKVGGLITEEVMRKAKRSTLSRVTQMRTGHGRFGEYFRRFNVQNVEYYCDCSEGNILETVEHIIRDCPKNEDAR KNLAEKFPAMELKDILGTKKGLRELITFLEH
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.