Protein

MCA_03180_1

Length
1,071 amino acids

Description: Polyprotein of L1-like non-LTR retrotransposon Zorro 3

Browser: contigB:3563862-3567078+

RNA-seq: read pairs 138, FPKM 1.6, percentile rank 10.8% (100% = highest expression)

Protein function

Annotation:Polyprotein of L1-like non-LTR retrotransposon Zorro 3
EGGNOG:0PQVBReverse transcriptase (RNA-dependent DNA polymerase)
CGD closest match:CAL0000185701FGR14Fgr14p

Protein alignments

%idAln lengthE-value
MIA_05328_139.92%10570.0MIA_05328_1
A0A167EHJ1_9ASCO35.34%10440.0Polyprotein of L1-like non-LTR retrotransposon Zorro 3 OS=Sugiyamaella lignohabitans GN=POL92 PE=4 SV=1
UniRef50_A0A167E5I232.28%10473e-179Polyprotein of L1-like non-LTR retrotransposon Zorro 3 n=7 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A167E5I2_9ASCO
A0A1D8PSY7_CANAL22.46%2853e-13Fgr14p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=FGR14 PE=4 SV=1
Q6C7P5_YARLI21.67%2401e-09YALI0D26444p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D26444g PE=4 SV=1
A0A0J9XBU6_GEOCN34.62%784e-08Uncharacterized protein OS=Geotrichum candidum GN=BN980_GECA07s02705g PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0366

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 100 200 300 400 500 600 700 800 900 1000 1071

Detailed signature matches

  1. Domain IPR005135
    Endonuclease/exonuclease/phosphatase
    1. SSF56219 (DNase I-like)
    2. G3DSA:3.60.10.10
    3. PF14529 (Exo_endo_p...)
  2. Domain IPR000477
    Reverse transcriptase domain
    1. PF00078 (RVT_1)
    2. PS50878 (RT_POL)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. G3DSA:3.30.70...
  3. SSF56672 (DNA/RNA p...)
  4. cd01650 (RT_nLTR_like)
  5. mobidb-lite (disord...)

Residue annotation

  1. putative NTP bindi...
  2. putative active si...
  3. putative nucleic a...

Protein sequence

>MCA_03180_1
MVQEPHVYRIREADLRKKNNESTPNEESNPNEDNEEERFCYVPILPHEWRAYYKQDNSRRVRAITYVSKKEKFKGKIMLL
DELTTRDMVAVKYKNLTIVNVYNQNNALDENEKPAIQYLRERLNEGALENFVMAGDLNLHHTEWDTNTRSNLREAREFVE
WTVNRGLNLCSTPDVPTRGQYVLDLILASEDVSGSIRMEALHKPERFASDHIPLWWTVGGSKDFSDGAAASPQRLNLKKM
DTEIFQKRLTVYIDLLGIPVGIPKDQGKVDQVATMLEEAVKRSMEDSAPVLRLVPKSKRYWTDELRDECRKMIEAKRLAK
TSNEPSLIEEARQATETFRESFKKARRDHWNKYVSSLTGNQAWKIMKYVNPKRREKPFVQLKKPDGSYVQSIDEAREILW
EKLLPEVSQGDELTLVNQKDDRWPALSPAEIEYAVQTIPDGKAPGPDGITGRILKEARKNSHFKMRFDKLLAACIHLGYH
PEVWRSSTIVVIPKAGKDDYSNPKSYRPISLLKITSKVLEKIVQRRLAFLTKDILPREQFGGRRGYSAVDAVLTLVNKVK
SENRTVSAMMIDVQGAFDHVKRQTLIETLVRMGLPNQAVNWVSSFMTSRRGNMVVDGAAGPEKEIKTGIPQGSPISPLLF
MLYTKEMYDKIRDEGGDPIGFIDDITVTVVGNTESNANQLSRILNSCCEWAKSRSTSIDLGPKLNYIHFKKNYSRRDWDA
MLVLPDGNAKKPDKTVRLLGIWLDSGLNFKEHIKKAIDKGYKKLQMIWRFGGTIKGLKGSTMRQFYLACVKSVLEYGIEV
WGVRCPSSSISQIQKLQNFALRRILGAYKSTPTEVLEKEAAIPPVELNQKYSLMRKAIRLTLNLDRTNPLSEITAASDET
SPVGKIKCTLRSLGLGIPSRKSILHEPPWNLDEDRAQEDTERWREIKNYNRKAYDFLLKSWQIKFNRGVKGDWYRRKTGG
NQGPCTYKVGGLITEEVMRKAKRSTLSRVTQMRTGHGRFGEYFRRFNVQNVEYYCDCSEGNILETVEHIIRDCPKNEDAR
KNLAEKFPAMELKDILGTKKGLRELITFLEH

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.