Protein

MCA_03130_1

Length
924 amino acids

Description: Reverse transcriptase

Browser: contigB:3448099-3450874-

RNA-seq: read pairs 1306, FPKM 17.4, percentile rank 37.7% (100% = highest expression)

Protein function

Annotation:Reverse transcriptase
EGGNOG:0QDZFReverse transcriptase (RNA-dependent DNA polymerase)

Protein alignments

%idAln lengthE-value
UniRef50_P0414626.42%3862e-25Copia protein n=4 Tax=Eukaryota TaxID=2759 RepID=COPIA_DROME
MIA_06017_124.93%3416e-23MIA_06017_1
A0A161HJI4_9ASCO21.58%4177e-14Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_4398 PE=4 SV=1
YCH4_YEAST24.75%2954e-12Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1317

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 100 200 300 400 500 600 700 800 924

Detailed signature matches

  1. Domain IPR013103
    Reverse transcriptase, RNA-dependent DNA polymerase
    1. PF07727 (RVT_2)

Protein sequence

>MCA_03130_1
MTYDDYENYVSCLTNTDICAAIARSDLESDFVHNLLYEKQEDERLGVPLVSLHQARKFIDSVTLSLVKLDPTKCVLHYVT
VGEWPKTLFLFDSINISYLDILERRVFIFLDTFFRRFIVNWQARLSVIDNSQTAPGLYKRLCQFLSRNAVRAVSDHLMIM
EEQFQGGYYFERRKGVVDSVNELHRNIEFLSAQSLLHGKDDAPPYYHYNSPMDILRQSTETDDIPCLQNLSLDDEFYYAA
THFEHNSGTDITNLEYLCSKEPLKAPEEDILFKFIDQTTDKRELSLHDRQGLKKAALCSAIEKCDLYKTIDILQRQISLL
ETGIITSITGSKAMVEGLSKTTKKRESVLKRAKEVVSDTALDPEKDMIQVTFHGSKMDQPLCTYDQCGPLTTKTINAYMC
FEDDEEYKSILKKSIKHWSEAKLRPHEKNMHPKGRHLAHLFESGVITPVTKPPRDKRILDSRFEKISDWSTGRGKEDPVF
KLVVNGQQQRKGIDYHHSQVPTCGHSYLRLFFAIGQGLGHKFSLFDFPEAYEHADLNEEIYVKLPQGSQYDIVKLNKCLP
GLKQANACWRKIIHDILVKATFRGIPGASAFYFTRNDESNKLTMAIVHYNQILFSTGDPDFLDLFRGKLIVSGISVKDLG
FPKYFLEVGIHRNEDKIIFTPESHLKDINSLVSRNSHYSPKLSEYAINGLREEYFRSLVKKLMFVSRAFRPDIAAEASIL
DEEGRFDNKDDEKNLKKAESLVEYLNSTRSYGLVYKKPDNEPISPTAHVGVDFLRADGIGRTGYIFQIFDNPILWLSLNQ
SERTHGLVEGEFEACISFMRHIYPVKNMLKTLKLLNKPIQIALTNKKTVAYLAKEWEYVPDSISTKKKYLNALQLMKEQD
FEVTFSHPYYIMASAFTQRVTDNPELEKIRKNLHVEEIKNNPLK

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.