Protein
MCA_03041_1
Length
399 amino acids
Browser: contigB:3171424-3172624+
RNA-seq: read pairs 2466, FPKM 76.2, percentile rank 74.4% (100% = highest expression)
Protein function
| KEGG: | K12606 | RCD1 | CCR4-NOT transcription complex subunit 9 |
|---|---|---|---|
| EGGNOG: | 0PFZX | FG09275.1 | cell differentiation protein Rcd1 |
| SGD closest match: | S000005232 | CAF40 | Protein CAF40 |
| CGD closest match: | CAL0000188205 | orf19.7198 | CCR4-NOT core subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_04768_1 | 86.19% | 268 | 2e-168 | MIA_04768_1 |
| A0A0J9XF73_GEOCN | 82.78% | 273 | 3e-166 | Similar to Saccharomyces cerevisiae YNL288W CAF40 Evolutionarily conserved subunit of the CCR4-NOT complex involved in controlling mRNA initiation OS=Geotrichum candidum GN=BN980_GECA14s00626g PE=4 SV=1 |
| A0A167CL68_9ASCO | 79.93% | 274 | 1e-157 | CCR4-NOT core subunit CAF40 OS=Sugiyamaella lignohabitans GN=CAF40 PE=4 SV=1 |
| A0A060TA30_BLAAD | 70.57% | 333 | 4e-158 | ARAD1D23980p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D23980g PE=4 SV=1 |
| Q6C319_YARLI | 78.39% | 273 | 4e-156 | YALI0F03344p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F03344g PE=4 SV=1 |
| UniRef50_W6MPZ9 | 74.10% | 278 | 2e-146 | Uncharacterized protein n=76 Tax=Fungi TaxID=4751 RepID=W6MPZ9_9ASCO |
| A0A1E3PN52_9ASCO | 73.08% | 286 | 2e-147 | Rcd1-like protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_22927 PE=4 SV=1 |
| A0A1D8PRG1_CANAL | 60.33% | 305 | 2e-129 | CCR4-NOT core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.7198 PE=4 SV=1 |
| CAF40_YEAST | 63.67% | 289 | 5e-128 | Protein CAF40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAF40 PE=1 SV=1 |
| A0A1E4TKH2_9ASCO | 64.18% | 268 | 3e-121 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_22185 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0695
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
300
350
399
Detailed signature matches
-
-
SSF48371 (ARM repeat)
-
no IPR
Unintegrated signatures
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CYTOPLASMIC_D... (C...)
-
NON_CYTOPLASM... (N...)
-
PF04078 (Rcd1)
-
TRANSMEMBRANE (Tran...)
-
mobidb-lite (disord...)
Protein sequence
>MCA_03041_1 MFNNQQSVYGMNHRQQQQQQPQNQGNMGFVGNASMNMRNIMPQQQQQQQQQPLNPNHQSINIPNNNNVRQNFHPTVQYLL NNANPSNGPTDGSQDIPDNKGNNRDDKSSNINNTKSNPNENPEHNIRRTADDDKVYTWILELMSGPNSEQALLELGKKRE QYEDLALILWHSFGVMTCLLQEIIYVYPLLSPPQLTSTASNRVCNALALLQCIASHDGTRQLFLNAHIPLFLYPFLSTTS KSKSFEYLRLTSLGVIGALVKNDSPEVISFLLSTEIIPLCLRIMETGTELSKTVAIFILQKILMDDSGLNYICQTFERFT AVSSVLGNMVKQLAGSPTARLLKHVVRCYLRLSDNLQACNELKRVLPEPLRDGTFSMSLKEDTATKKCLAQLLDHLSDK
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0005488 binding
Cellular Component
None predicted.