Protein
MCA_02709_1
Length
1,643 amino acids
Gene name: RPO41B
Description: DNA-directed RNA polymerase, mitochondrial
Browser: contigB:2125827-2130863+
RNA-seq: read pairs 490, FPKM 3.7, percentile rank 15.1% (100% = highest expression)
Protein function
| Annotation: | RPO41B | DNA-directed RNA polymerase, mitochondrial | |
|---|---|---|---|
| KEGG: | K10908 | POLRMT | DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] |
| EGGNOG: | 0PJAJ | RPO41 | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity) |
| SGD closest match: | S000001858 | RPO41 | DNA-directed RNA polymerase, mitochondrial |
| CGD closest match: | CAL0000185076 | RPO41 | DNA-directed RNA polymerase |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03486_1 | 32.29% | 1728 | 0.0 | MIA_03486_1 |
| A0A0J9X6S8_GEOCN | 32.18% | 1439 | 0.0 | DNA-directed RNA polymerase OS=Geotrichum candidum GN=BN980_GECA04s04498g PE=3 SV=1 |
| UniRef50_A0A0J9X6S8 | 32.18% | 1439 | 0.0 | DNA-directed RNA polymerase n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X6S8_GEOCN |
| A0A161HJK4_9ASCO | 33.71% | 976 | 6e-154 | Rpo41p OS=Sugiyamaella lignohabitans GN=RPO41 PE=4 SV=1 |
| A0A060T809_BLAAD | 33.17% | 817 | 2e-122 | DNA-directed RNA polymerase OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D03432g PE=3 SV=1 |
| RPOM_YEAST | 32.39% | 883 | 2e-120 | DNA-directed RNA polymerase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPO41 PE=3 SV=2 |
| Q6CH64_YARLI | 29.99% | 1007 | 6e-120 | DNA-directed RNA polymerase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A12001g PE=3 SV=1 |
| A0A1D8PCA4_CANAL | 30.85% | 1008 | 3e-119 | DNA-directed RNA polymerase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPO41 PE=3 SV=1 |
| A0A1E3PUP0_9ASCO | 34.15% | 861 | 5e-119 | DNA-directed RNA polymerase OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_30998 PE=3 SV=1 |
| A0A1E4TGB0_9ASCO | 29.47% | 1035 | 4e-110 | DNA-directed RNA polymerase OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_31657 PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.9723
Predicted cleavage: 56
Protein family membership
- DNA-directed RNA polymerase, phage-type (IPR002092)
Domains and repeats
-
Domain
1
200
400
600
800
1000
1200
1400
1643
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
-
-
SSF56672 (DNA/RNA p...)
-
mobidb-lite (disord...)
Protein sequence
>MCA_02709_1 MAVILSKFANGPVHSALTKISNYRRLQSIALYSSLVQFSWNQKYRRFLPNDFTPDQNNGNVNQLDSLANKRNTDFNTVYY QYFTQPIAFLSSNKQEANALIIKYKSSLDSLDFIESLNLISAMVLSNYFTSSMDIVYNCFSLLISSIVDFAVTEIEKVQG SPLSQSQKIAHINSISVSLYHTLTHSFDTFIHTLKTSSNNTKYPTSPVAYALHMIAHSLSSDPSLNMIRDDLILKLIYKW TRDYKQSLDDLFIHSEILTESEKHLIQTLSGLKTSDSKPLPSSQNTIIDVEKDKISPAIEFSAPTSMEESFSTITTQGEE INCIVGKNVLKSVLDVKSIFGNDVYEKCLVDGHVNYMKLADVLLKSGNPELVLKFEQILDEFNRKRQFELELGLQNIQIE LNNQKIFGFNEPESNNEKNSINAPRMIKDDPASRFGQSKGRSNHKLRDLVLLWSDHLTKILEHQMTLHTRAKSRRNHNTK EVAESQDSKHIFGQYISMLQELGANTVANVVAMELATHVLLSLQNTNHMASSLPTSSPVSLTHLSRKVGKSVEQAYLQKG LQETIQRLKKDKQKHLKQKDPQHESNTTQTNAKKEIDPARVQFVEIAQQFSVKGTTQKLLYPKSSKHYKWAMSKLSSMSS LQSIQLGATLISLALTACKFPVKVEKTEQHEYETSSRSNDVVWKPAFWHTFQIYKSKSIGVLKVNDFLIEYLLPKQNNKE NSKNFSSDGNAIVSPLDSMIINKVPAMFVPPSPWTSDNKGGYWYSKQSLLSIPKDQAPEVHAYLQQAISSGYLDKYLNAL NKLAQTPWAVNYKILKVIKSIWDKGESFLDIPSDVSNKEPEDLSNLDRYELRRRKVAEYNERNLRIGLGYILQQASYWAT HGDRFYFPHMIDFRGRVYPKSSSGFVHTGPDHVRALFQFWNGRKLGKDGLRWLKIQLATTFGVDKSSFNDRVKFVDENYP RIAKVAHDPLGVKFQEYHAQNSSISLDEQEELKYKEDCLWWTQAEEPFQMLAACFELVEAVESNDVENYVSRLPIMQDGS CNGLQHYAALGRDIEGGIEVNVVPSTLLDPQSKSSGEILSGHMLKPRDVYSKVKSLVEQLTQQDIEALENYKGGRKGPKF KEVYDNGTMAKEILPYVSRKVVKRPVMTSVYGATFYGMTLQIYDVLKRDQQLVKDIETKNSAAKVSNLKMRESIQYIQNS EDLEDEELMEHENFETVDTIERQLKQYSRYLASKVIESYNILFGNAKKIQKWLEESAEKIIESVRWDNYIFSDEQHQFDL NLENITDTEERELIKLNVSGSLPFDFLLPGRLVTSVIWTTPLGLPVVQPYRLETPVSLVSSSDNESSTPSNIQIVRTGIQ DMIISNPFTLTFVNKQRQINGIAPNYIHSLDSTHLLMTVLKFFNEEISTNSLYTKKEQSSGNDSLLQYPPSFASVHDSYW THASSVDKMNKILRQTFVDVHTPNLIQSLYEEFKERYDGYLSVAYIEKNSPAGKEISTLREKRRNIISKWTTKEKEEENP NFGNTKRIINKELEIIENGSNNKKPITKKQTLKNELTDLKYEMKMEYVNWKRIKSKSEKPLYITPSMIIKKHNQPVYKKD PSSSSSSKSQEMIRVFMPLEISLIPSRGTLDINQVKNSTYFFS
GO term prediction
Biological Process
GO:0006351 transcription, DNA-templated
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
Cellular Component
None predicted.