Protein
MCA_02565_1
Length
540 amino acids
Browser: contigB:1665630-1667379+
RNA-seq: read pairs 1481, FPKM 33.8, percentile rank 56.0% (100% = highest expression)
Protein function
| KEGG: | K13091 | RBM39 | RNA-binding protein 39 |
|---|---|---|---|
| EGGNOG: | 0PI0I | FG05165.1 | RNA splicing factor Pad-1 |
| SGD closest match: | S000001128 | NAM8 | Protein NAM8 |
| CGD closest match: | CAL0000200313 | orf19.6090 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_05291_1 | 45.25% | 453 | 3e-111 | MIA_05291_1 |
| A0A0J9X7A9_GEOCN | 46.52% | 417 | 1e-108 | Uncharacterized protein OS=Geotrichum candidum GN=BN980_GECA04s03343g PE=4 SV=1 |
| UniRef50_A0A0F7VIA1 | 43.62% | 431 | 6e-103 | Putative RNA splicing factor n=46 Tax=Fungi TaxID=4751 RepID=A0A0F7VIA1_9EURO |
| A0A1E3PEN7_9ASCO | 43.24% | 377 | 1e-91 | Splicing factor, CC1-like protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_48217 PE=4 SV=1 |
| A0A060T5C0_BLAAD | 39.31% | 407 | 4e-79 | ARAD1C10802p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C10802g PE=4 SV=1 |
| A0A161HHQ6_9ASCO | 38.56% | 319 | 1e-52 | Polyadenylate-binding protein OS=Sugiyamaella lignohabitans GN=PAB1 PE=4 SV=1 |
| Q6C4U4_YARLI | 43.72% | 215 | 4e-44 | YALI0E23628p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E23628g PE=4 SV=1 |
| Q5AB84_CANAL | 24.64% | 207 | 2e-13 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.6090 PE=4 SV=1 |
| NAM8_YEAST | 26.22% | 225 | 7e-13 | Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAM8 PE=1 SV=2 |
| A0A1E4THK5_9ASCO | 25.66% | 226 | 2e-11 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_25868 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0637
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Domain
1
50
100
150
200
250
300
350
400
450
500
540
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
cd12283 (RRM1_RBM39...)
-
cd12285 (RRM3_RBM39...)
-
mobidb-lite (disord...)
Protein sequence
>MCA_02565_1 MTSSIQTEQLANSESNSSLEPFPTSKISNNLNESIEPPTNFQPGEQPSKSPSRLSRSRSRSPSRGDEEFGRERSRSSRHR DRSSSRHKSGRGYDHESERRRRERRDRDRDYDRYTRRHRDEHKSRHRRHSSPSPHKDVERDQRTVFVQQLAARIRTRELI DFFESNVGPVRDASIVKDKASGRSKGVAYVEFRKREDVAKAIGLTGEKLLGIPIIVQYTEAEKNRQKAEAANREYMKLQQ NDDDNSHGLSSPKTAGNIRHGNGNNNINVNGGPPDSRIYVGNIHFGVAEPELQSIFGSFGEIQFVKLQRDPTGKSKGYAF IQFKTKEAAEQARTSMQGFMLAGRNLRVGMGGANQTQNFNQYPSPQPNNGNPSPDNTTHFRSHIDNTQASVLDNSDVAGI SYSNSVRSELMKNLLREEDGLKPMPPVISTNKTEPITRNPSRCVVVQNMFNATEETDPNWVQNLELDVKEECESKYGEVV HISVDPNTEKGEVYIKFKTVDQGMKAVAGLDGRYFDGRMLTALPFVEIMYNIKFPKSKDL
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.