Protein

MCA_02560_1

Length
1,112 amino acids

Gene name: HSH155

Description: U2 snRNP component HSH155

Browser: contigB:1656098-1659560+

RNA-seq: read pairs 1855, FPKM 20.6, percentile rank 42.2% (100% = highest expression)

Protein function

Annotation:HSH155U2 snRNP component HSH155
KEGG:K12828SF3B1 splicing factor 3B subunit 1
EGGNOG:0PH7GPGUG_00058Splicing factor 3B subunit 1
SGD closest match:S000004901HSH155U2 snRNP component HSH155
CGD closest match:CAL0000190260orf19.2675mRNA-binding U2 snRNP complex subunit

Protein alignments

%idAln lengthE-value
MIA_05323_174.42%11300.0MIA_05323_1
A0A0J9XA94_GEOCN67.53%11150.0Similar to Saccharomyces cerevisiae YMR288W HSH155 U2-snRNP associated splicing factor OS=Geotrichum candidum GN=BN980_GECA07s00175g PE=4 SV=1
A0A161HK89_9ASCO66.88%10840.0Hsh155p OS=Sugiyamaella lignohabitans GN=HSH155 PE=4 SV=1
A0A060TC98_BLAAD66.15%10900.0ARAD1B15092p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B15092g PE=4 SV=1
UniRef50_A0A1D2JJ4557.80%12250.0Uncharacterized protein n=1 Tax=Paracoccidioides brasiliensis TaxID=121759 RepID=A0A1D2JJ45_PARBR
A0A1E3PPT0_9ASCO63.44%11160.0ARM repeat-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_49372 PE=4 SV=1
Q6CDW3_YARLI57.19%11540.0YALI0B20724p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B20724g PE=4 SV=1
A0A1E4TCU6_9ASCO59.00%8390.0Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_140918 PE=4 SV=1
SF3B1_YEAST50.36%9810.0U2 snRNP component HSH155 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSH155 PE=1 SV=1
Q5AFD2_CANAL47.68%11220.0mRNA-binding U2 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2675 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0188

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Repeat
1 200 400 600 800 1000 1112

Detailed signature matches

  1. Domain IPR011989
    Armadillo-like helical
    1. G3DSA:1.25.10.10
  2. Domain IPR015016
    Splicing factor 3B subunit 1
    1. PF08920 (SF3b1)
  3. Domain IPR016024
    Armadillo-type fold
    1. SSF48371 (ARM repeat)
  4. Repeat IPR021133
    HEAT, type 2
    1. PS50077 (HEAT_REPEAT)
Unintegrated signatures no IPR
Unintegrated signatures
  1. mobidb-lite (disord...)

Protein sequence

>MCA_02560_1
MTDSDFDELRKLKSERHKIQASYESNNEHKKENVQADMPKNSSRSLVGNYTATAEMIEDIVRDDDFDPLANRASKKTIAD
RESEYQRKKYETFKDEGEQDLSYKDAMELRKIEREEKLVQDMIRKNEDPQNIKNEIKNDAVQQTEAKPQRKRGWDQQTEP
EQESKSQLQNQKKSRWDVTDKPKKRSSRWDQVPAPQQSKADIKSEITDEYLNTILPSEGYIILEPPVNYVPITNNRLADN
PIAESDGFIMLEDNSIQGLGMSKMLPTEIPGVGELQYFKESDMKYFGKLVEKENESYLSVEEIKERKVLRLLLKIKNGAP
HVRKVALRQITDNAISFGPKVLFNQIMPLLMDQTLEDQERHLLVKVIDRVLYKLGDLVRPYTHKILVVIEPLLIDEDYFA
RVEGREIISNLSKAAGLAHMIATMRPDIDNSDEYVRNTTARSFAVVASALGIPSLIPFIKAVCRSRKSWEARHTGIKIVQ
QIAIFSGCAVLPHLKSLIECIARGLEDEQNKVKVMAAHALAALADAAAPYGIESFEIVLEPLWHGIRRHRGKNLAAFLRC
LGCIIPLTDPDYANYYTTEVMKIVLKEYSTSDEDMKKTVLKVTQQCCSTEGVSPKYLKEEVLPSFFRNFWVRRIALDKRS
SKQVIDTTVELSRKVGSTEVLERIVDALKDESEAYRKMAIETIDKVIGELGVAEIPDRLEKRLIDGILVAFQQQTMDDST
VLNGFGTIVNSLGVRTKSYIPQIVSAILFRLNREIPAVRQQAADLITKVAMVMKLCNEDELLGKLGSILYEHLGEEYPEV
LGSMLGALGSIVNVIGMSSMQPPIRDLLPRLTPILRNRHEKVQENTINLVGKIAQRGPEYVGAREWMRICFELLDLLKAH
RKSIRRAANDTFGYIANAIGPQDVLTTLLSNLRVQERQSRVCTAVAIGIVAETCAPFTVLPALMNEYRVPEMNVQNGVLK
SMTFMFEYIGDMAKDYIYAVTTLLEDALIDRDQVHRQTAAIVVKHLALGCIGLGYEDAMIHLLDLIFPNIFETSPHVIDR
ILEGIEGIRNAVGCGIVLNYIWAGLFHAARKVRTPYWKVYNSAYLQSADSMVPYYPELEEPTYHRNELDLWI

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005488 binding

Cellular Component

None predicted.