Protein
MCA_02405_1
Length
414 amino acids
Gene name: SLT11
Description: Pre-mRNA-splicing factor SLT11
Browser: contigB:1181979-1183280+
RNA-seq: read pairs 606, FPKM 18.0, percentile rank 38.6% (100% = highest expression)
Protein function
| Annotation: | SLT11 | Pre-mRNA-splicing factor SLT11 | |
|---|---|---|---|
| KEGG: | K12872 | RBM22 | pre-mRNA-splicing factor RBM22/SLT11 |
| EGGNOG: | 0PH4S | SLT11 | Involved in pre-mRNA splicing. Facilitates the cooperative formation of U2 U6 helix II in association with stem II in the spliceosome. Binds to RNA |
| SGD closest match: | S000000269 | ECM2 | Pre-mRNA-splicing factor SLT11 |
| CGD closest match: | CAL0000189228 | SLT11 | Pre-mRNA-splicing factor SLT11 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01699_1 | 54.22% | 415 | 2e-144 | MIA_01699_1 |
| A0A0J9XJ23_GEOCN | 46.79% | 374 | 4e-117 | Similar to Saccharomyces cerevisiae YBR065C ECM2 Pre-mRNA splicing factor OS=Geotrichum candidum GN=BN980_GECA18s00736g PE=4 SV=1 |
| UniRef50_A0A0J9XJ23 | 46.79% | 374 | 8e-114 | Similar to Saccharomyces cerevisiae YBR065C ECM2 Pre-mRNA splicing factor n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XJ23_GEOCN |
| A0A060TCF8_BLAAD | 45.38% | 368 | 7e-104 | ARAD1B16214p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B16214g PE=4 SV=1 |
| SLT11_YARLI | 45.81% | 358 | 1e-99 | Pre-mRNA-splicing factor SLT11 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SLT11 PE=3 SV=1 |
| A0A167EHZ3_9ASCO | 43.62% | 376 | 1e-97 | Ecm2p OS=Sugiyamaella lignohabitans GN=ECM2 PE=4 SV=1 |
| A0A1E3PLA5_9ASCO | 32.18% | 348 | 8e-50 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_50140 PE=4 SV=1 |
| SLT11_CANAL | 27.48% | 353 | 3e-34 | Pre-mRNA-splicing factor SLT11 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SLT11 PE=3 SV=1 |
| A0A1E4THA3_9ASCO | 29.50% | 322 | 1e-28 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_116791 PE=4 SV=1 |
| SLT11_YEAST | 22.16% | 361 | 4e-24 | Pre-mRNA-splicing factor SLT11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECM2 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0308
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
300
350
414
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_02405_1 MPPKADINKATWEDTEVPAVCETCLGPNPYIRMTRERYGLECKLCTRPFTVFKWTPDSVQSSSSSVRQKPKKTTICLTCA RQKNCCQSCMLDLTYGLPLEIRDTALKMIMSAANNTNGGGKNGFLSIEQMNTSSNASNAVIRQYIAQNLDAENKSAQDLE DEQRTKILKESEAARNFLKQIAMGFPQNKHLLTSHQQEQARKTAASKDSSQQEDGNSKALAIDVGKIAAKLPLNGFPKPF PKDTSIRTIFVMGIEDDLPEYVLRDYFLSVLTSSNKFDPKSLTSAISSSLCVHRSRCGFFTFKTREMAETVAQSTANSNG KFTLNGCKLRLAWSNPKSLGTTNAQHTRLGQIVRRVMKQRDLKERKAKRDGSNNISSESSSSNKDNTEKPQLVLPPPPVN QKIKYKTAQSGYED
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.