Protein
MCA_02351_1
Length
344 amino acids
Gene name: CWC24
Description: Pre-mRNA-splicing factor CWC24
Browser: contigB:1032634-1033669-
RNA-seq: read pairs 1169, FPKM 41.9, percentile rank 61.3% (100% = highest expression)
Protein function
| Annotation: | CWC24 | Pre-mRNA-splicing factor CWC24 | |
|---|---|---|---|
| KEGG: | K13127 | RNF113A | RING finger protein 113A |
| EGGNOG: | 0PJWC | CWC24 | factor cwc24 |
| SGD closest match: | S000004315 | CWC24 | Pre-mRNA-splicing factor CWC24 |
| CGD closest match: | CAL0000187163 | CWC24 | Pre-mRNA-splicing factor CWC24 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9YHJ5_GEOCN | 42.34% | 222 | 9e-50 | Similar to Saccharomyces cerevisiae YLR323C CWC24 Essential protein component of a complex containing Cef1p OS=Geotrichum candidum GN=BN980_GECA01s05400g PE=4 SV=1 |
| UniRef50_A0A0J9YHJ5 | 42.34% | 222 | 2e-46 | Similar to Saccharomyces cerevisiae YLR323C CWC24 Essential protein component of a complex containing Cef1p n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9YHJ5_GEOCN |
| MIA_05932_1 | 43.75% | 160 | 1e-40 | MIA_05932_1 |
| A0A167D8Z6_9ASCO | 46.24% | 173 | 2e-38 | Cwc24p OS=Sugiyamaella lignohabitans GN=CWC24 PE=4 SV=1 |
| A0A060T0P6_BLAAD | 41.67% | 180 | 1e-36 | ARAD1C14674p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C14674g PE=4 SV=1 |
| CWC24_YARLI | 39.29% | 168 | 3e-34 | Pre-mRNA-splicing factor CWC24 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CWC24 PE=3 SV=1 |
| A0A1E3PI40_9ASCO | 43.83% | 162 | 3e-35 | Uncharacterized protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_10408 PE=4 SV=1 |
| CWC24_YEAST | 35.85% | 159 | 8e-26 | Pre-mRNA-splicing factor CWC24 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CWC24 PE=1 SV=1 |
| CWC24_CANAL | 32.53% | 166 | 5e-20 | Pre-mRNA-splicing factor CWC24 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CWC24 PE=3 SV=2 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.8070
Predicted cleavage: 44
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
300
344
Detailed signature matches
no IPR
Unintegrated signatures
-
PF13923 (zf-C3HC4_2)
-
SSF57850 (RING/U-box)
-
cd16539 (RING-HC_RN...)
-
mobidb-lite (disord...)
Residue annotation
-
Zn binding site cd...
Protein sequence
>MCA_02351_1 MFKKRKINKNSISSASNKESSTKPASTTVTNRRRRLSDVSDDINASTPEDTTVVAKKSVFDSPGDINTVTSQSNKKNSAS KDTEITELVSKSETTAEDESIDKEKQDGKHEDNAEVSSNIKTFSGNIQVAKFLNIPKERQEFNANKRKQMGIVSSGSSYG PSSASSTIKSTTMTDYAPDICKDYKQNGFCGFGDTCKFLHIREDYAAGWKLDKRWEERQKKKQSGVEDNEEDEDDLLRDS KSVLELKNGWKPKRKYGAIESSNTTNKLESKANNEADDGKCGICHQDYKFPVVTPECNHVFCESCFLKEFNKSKDCKKCG TKLMGVVNPYKKPKDNSSRKLISS
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0046872 metal ion binding
Cellular Component
None predicted.