Protein
MCA_02266_2
Length
915 amino acids
Browser: contigB:753132-756148-
RNA-seq: read pairs 4906, FPKM 66.2, percentile rank 71.3% (100% = highest expression)
Protein function
| KEGG: | K14411 | MSI | RNA-binding protein Musashi |
|---|---|---|---|
| EGGNOG: | 0PIPU | PGUG_04213 | heterogeneous nuclear ribonucleoprotein HRP1 |
| SGD closest match: | S000005483 | HRP1 | Nuclear polyadenylated RNA-binding protein 4 |
| CGD closest match: | CAL0000180372 | orf19.5989 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03853_1 | 88.14% | 194 | 2e-117 | MIA_03853_1 |
| A0A0J9X4G9_GEOCN | 82.51% | 183 | 2e-98 | Similar to Saccharomyces cerevisiae YOL123W HRP1 Subunit of cleavage factor I, a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends OS=Geotrichum candidum GN=BN980_GECA02s04960g PE=4 SV=1 |
| UniRef50_A0A0J9X4G9 | 82.51% | 183 | 3e-95 | Similar to Saccharomyces cerevisiae YOL123W HRP1 Subunit of cleavage factor I, a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X4G9_GEOCN |
| A0A1E3PP49_9ASCO | 76.92% | 182 | 4e-93 | RNA-binding domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_45392 PE=4 SV=1 |
| Q6CC04_YARLI | 71.59% | 176 | 1e-85 | YALI0C13860p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C13860g PE=4 SV=1 |
| A0A060SZC4_BLAAD | 77.02% | 161 | 5e-82 | ARAD1C06402p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C06402g PE=4 SV=1 |
| A0A161HH86_9ASCO | 70.99% | 162 | 2e-76 | Hrp1p OS=Sugiyamaella lignohabitans GN=HRP1 PE=4 SV=1 |
| HRP1_YEAST | 56.63% | 166 | 2e-63 | Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1 SV=1 |
| Q5ANB5_CANAL | 56.17% | 162 | 9e-60 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.5989 PE=4 SV=1 |
| A0A1E4TFP8_9ASCO | 53.61% | 166 | 2e-59 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_26233 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1746
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
100
200
300
400
500
600
700
800
915
Detailed signature matches
-
-
cd12577 (RRM1_Hrp1p)
-
no IPR
Unintegrated signatures
-
-
-
mobidb-lite (disord...)
Residue annotation
-
RNA binding site c...
Protein sequence
>MCA_02266_2 MSTFDEDDFFAGIYDDSSKVKSESKPETTEANNDSTASPKPSTAESNNTETATNTESSPSVSDPRLKGKAPSASSTTDEP NNDTSNPSNNALSQLDNFFNNATGNTGMPDSNNSNMPTSSNNFNNNNNNNNNNNFDAQNQNQNMNNNYSNYNNNNNNNNN NNNNQNNQNNRRDGSATNTGQIYISPKDEGKMFVGGLNWETTDESLRNYFSQFGELEDCTVMRDNVTGRSRGFGFLTFAD PKCVNKVIATEHFLDGKIIDPKRAIPREEQDKTAKIFVGGVSLDVTEEDFNNFFSKYGTVIDAQLMIDTNSGKPRGFGFI TFDSHDAVETIVNEPILILKGKPIDVKRAEPRLKDSNGNFIPNSRPGNKKFNNQNNYNNMGGFNNQAGYQAPTNPMGMNM GAMGAGMTGMGGMAGMSGMGAMGAGMGGMNMNMGMMNPMMMAQYFQRWQAYLTQMEQFINSPANANNPALPQQLQQLQMM KQNLALQMKSTNYDPATAPTVPTTGAPGVPGASGSPAAITAGTSSETKEGSADPADSSVAKDGASTDATSGTPGTVSEPS SIPTSVSDMGMNNNNNGFNQGGYNQMYNNGPNNYKDQSYNNNYNDQSNYNGQQGYNNYNKNNNGRYRRYNNNNQYYNNNN NNNNGNYPGNNGNNPYYTGSNGFITLHNNPNKINTNNGSAAITLVKGEDDQANSENGDNGEKGGKSDEDDDNRNNSRYSR YGGNDYHKDRSSKYNNGGNRYSNKRHRDRYDDDDDDDYDGDRDRERERDDRDASPRVDDDYDNDDDDDKSSSYHHRYRGH KSKDLSLSERIRDDKDGGNRKRRRGDSDRDASSSRYRRSGSKERDYKSGSSRHRSSRRKDRDGRDRERDRDGGRDKDRGD KDRDSGDASPPLNVPTGPRGSFRSKSSKRHRYGRN
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.