Protein
MCA_02206_1
Length
263 amino acids
Gene name: RPS4
Description: 40S ribosomal protein S4
Browser: contigB:585385-586624+
RNA-seq: read pairs 92952, FPKM 4350.5, percentile rank 99.3% (100% = highest expression)
Protein function
| Annotation: | RPS4 | 40S ribosomal protein S4 | |
|---|---|---|---|
| KEGG: | K02987 | RP-S4e | small subunit ribosomal protein S4e |
| EGGNOG: | 0PFCX | RPS4 | 40s ribosomal protein S4 |
| SGD closest match: | S000001246 | RPS4B | 40S ribosomal protein S4-B |
| CGD closest match: | CAL0000191446 | RPS42 | 40S ribosomal protein S4 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0F7RST7_GEOCN | 84.94% | 259 | 2e-166 | 40S ribosomal protein S4 OS=Geotrichum candidum GN=BN980_GECA01s05554g PE=3 SV=1 |
| A0A060T8X7_BLAAD | 84.17% | 259 | 6e-166 | 40S ribosomal protein S4 OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D14586g PE=3 SV=1 |
| A0A1E3PTE1_9ASCO | 85.49% | 255 | 2e-165 | 40S ribosomal protein S4 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_39598 PE=3 SV=1 |
| MIA_04010_1 | 90.57% | 244 | 1e-164 | MIA_04010_1 |
| RS4_YARLI | 82.69% | 260 | 3e-163 | 40S ribosomal protein S4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RPS4 PE=2 SV=1 |
| A0A1E4TLB0_9ASCO | 79.54% | 259 | 8e-158 | 40S ribosomal protein S4 OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_30676 PE=3 SV=1 |
| RS4B_YEAST | 79.07% | 258 | 3e-154 | 40S ribosomal protein S4-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS4B PE=1 SV=1 |
| UniRef50_P0CX35 | 79.07% | 258 | 6e-151 | 40S ribosomal protein S4-A n=78 Tax=Opisthokonta TaxID=33154 RepID=RS4A_YEAST |
| A0A167E7H2_9ASCO | 84.23% | 241 | 5e-153 | 40S ribosomal protein S4 OS=Sugiyamaella lignohabitans GN=RPS4A PE=3 SV=1 |
| A0A1D8PCI6_CANAL | 78.38% | 259 | 6e-153 | 40S ribosomal protein S4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPS42 PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.8424
Predicted cleavage: 32
Protein family membership
- Ribosomal protein S4e (IPR000876)
Domains and repeats
-
Domain
-
Domain
-
Domain
1
50
100
150
200
263
Detailed signature matches
no IPR
Residue annotation
-
RNA binding surfac...
-
RNA binding site c...
Protein sequence
>MCA_02206_1 MARGQKKHLKRLAAPSHWMLDKLSGTYAPRPSPGPHKLRESLPLIIFLRNRLKYALNGREAQAIVMQRLVKVDGKVRTDV TYPTGFMDVVSLDKTGDNFRLIYDVKGRFAIHKISEEEAQYKLAKVKKVQLGKKGIPYLVTHDGRTIRYPDPLIKVNDTV KIDLSTGKITSFIKFGHGNVVMVTGGRNLGRVGVITHLERHEGGFDIVHIKDALDNTFLTRLSNVFIIGEGSQPLISLPK AKGIKLTIAEERDQRLAEAEEAD
GO term prediction
Biological Process
GO:0006412 translation
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Cellular Component
GO:0005622 intracellular
GO:0005840 ribosome