Protein

MCA_02141_1

Length
874 amino acids

Browser: contigB:344496-347431-

RNA-seq: read pairs 8814, FPKM 124.5, percentile rank 82.3% (100% = highest expression)

Protein function

KEGG:K17302COPB2 coatomer subunit beta'
EGGNOG:0PFS1FG05844.1beta' subunit
SGD closest match:S000003105SEC27Coatomer subunit beta'
CGD closest match:CAL0000201645SEC27Coatomer subunit beta'

Protein alignments

%idAln lengthE-value
MIA_03842_171.12%8310.0MIA_03842_1
A0A0J9XE03_GEOCN69.55%8080.0Coatomer subunit beta' OS=Geotrichum candidum GN=BN980_GECA11s03552g PE=3 SV=1
A0A1E3PP70_9ASCO63.75%8330.0Coatomer subunit beta' OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_45399 PE=3 SV=1
A0A161HFR9_9ASCO65.41%7980.0Coatomer subunit beta' OS=Sugiyamaella lignohabitans GN=SEC27 PE=3 SV=1
A0A060TI80_BLAAD62.76%7840.0Coatomer subunit beta' OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D44418g PE=3 SV=1
Q6CB55_YARLI60.22%8070.0Coatomer subunit beta' OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C21802g PE=3 SV=2
UniRef50_Q6CB5560.22%8070.0Coatomer subunit beta' n=100 Tax=Opisthokonta TaxID=33154 RepID=Q6CB55_YARLI
A0A1E4TF13_9ASCO58.04%7960.0Coatomer subunit beta' OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_105966 PE=3 SV=1
COPB2_YEAST52.12%8500.0Coatomer subunit beta' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC27 PE=1 SV=1
A0A1D8PPV5_CANAL49.30%8580.0Coatomer subunit beta' OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC27 PE=3 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1141

Protein family membership

Domains and repeats

  1. Domain
  2. Domain
  3. Repeat
  4. Repeat
1 100 200 300 400 500 600 700 800 874

Detailed signature matches

  1. Family IPR016453
    Coatomer beta' subunit (COPB2)
    1. PIRSF005567 (Beta'-COP)
  2. Domain IPR015943
    WD40/YVTN repeat-like-containing domain
    1. G3DSA:2.130.1...
  3. Domain IPR017986
    WD40-repeat-containing domain
    1. SSF50978 (WD40 repe...)
    2. PS50294 (WD_REPEATS...)
  4. Domain IPR011042
    Six-bladed beta-propeller, TolB-like
    1. G3DSA:2.120.1...
  5. Domain IPR006692
    Coatomer, WD associated region
    1. PF04053 (Coatomer_WDAD)
  6. Domain IPR011990
    Tetratricopeptide-like helical domain
    1. G3DSA:1.25.40.10
  7. Repeat IPR001680
    WD40 repeat
    1. PF00400 (WD40)
    2. PS50082 (WD_REPEATS_2)
    3. SM00320 (WD40_4)
  8. Repeat IPR020472
    G-protein beta WD-40 repeat
    1. PR00320 (GPROTEINBRPT)
  9. SITE IPR019775
    WD40 repeat, conserved site
    1. PS00678 (WD_REPEATS_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. cd00200 (WD40)
  2. mobidb-lite (disord...)

Residue annotation

  1. structural tetrad ...

Protein sequence

>MCA_02141_1
MAQFTTDLPKISTTKFDLNVNLRLRSDRVKGIDFHPTEPWILTTLFSGRVQIISYETNSVIRTIDVSDVPVRAGRFIARK
NWIVVGSDDFQIRVFNYNTSEKVCQFEAHPDYIRTLAVHPTQPILLSSGDDMTIKMWNWEMNWKLLRTFEGHTHYVMYVA
FNPKDTNTFASACLDGTVKIWSLGSSTPNITFLAHETRGVNFVEYYPFPDKPYLITSSDDQTIRVWDYQMKSNVATLEGH
SSNVSFAMFHPELPLIISGGEDNMTKFWNANTFKIEYTLDFGLDRAWCIACKKGTNYVALGYDAGASVLKIGNDEPTISM
DPSGKVVWSKHSEVFSSVVKRTEDVKDGETLTLTQKDLGSVEVFPTQLIHSPNGRFVAVTGDGEYIIYTALAWRNKSFGS
GVEFVWAHDSNEFAVRTKSKDVRVFKNFKERPTDFIDASGVDKIFGGALLGCAQSEYVEFFDWESGRKVRRVDVEAKQIF
WSDSGELVTIATSDSFYILKFSRENFVAALQNGEYDETDGAEDSFEVIHDISDSIKTGKWVGDCFIYTTSSNKLNYLVGG
EIYTINHFDKEMYLLGYIPRDDSVYLADKELNVTSYHLSLKLVEYQTVVLRGDMELASEILQDIPESEKSKVSRFLEAQG
YTDLAMEVSDDPEQKFDLALKLGDFEAAKEIADKVNNVAKWRSLGDASLAAWNVTLAEQCFEKAGDLESLFLIYTSTGNK
TSLKSIADKAVALGKYNLAFNTLWYLKDTAGCVALLNKHNKSQEGALFALTYGEDPSKSIELWKKSLVHSGKKRIAGFIS
SPEEEPEKFPQNTKSKKPTSNGSSHAAPAESDNLIDVDDSATAPEPKTEEPQVASEPVESEPVVVQKEDLLEEE

GO term prediction

Biological Process

GO:0006886 intracellular protein transport
GO:0016192 vesicle-mediated transport

Molecular Function

GO:0005198 structural molecule activity
GO:0005515 protein binding

Cellular Component

GO:0030117 membrane coat