Protein
MCA_02039_2
Length
247 amino acids
Gene name: SKI6
Description: Exosome complex component SKI6
Browser: contigB:78900-79786-
RNA-seq: read pairs 735, FPKM 36.6, percentile rank 58.4% (100% = highest expression)
Protein function
| Annotation: | SKI6 | Exosome complex component SKI6 | |
|---|---|---|---|
| KEGG: | K11600 | RRP41 | exosome complex component RRP41 |
| EGGNOG: | 0PI30 | SKI6 | exosome complex |
| SGD closest match: | S000003427 | SKI6 | Exosome complex component SKI6 |
| CGD closest match: | CAL0000180234 | orf19.4582 | Exosome non-catalytic core subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_05568_1 | 75.10% | 245 | 1e-125 | MIA_05568_1 |
| A0A0J9XCA1_GEOCN | 63.60% | 239 | 6e-108 | Similar to Saccharomyces cerevisiae YGR195W SKI6 Exosome non-catalytic core component OS=Geotrichum candidum GN=BN980_GECA09s00142g PE=4 SV=1 |
| A0A1E3PMR7_9ASCO | 56.72% | 238 | 2e-97 | Ribosomal protein S5 domain 2-like protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_73883 PE=4 SV=1 |
| UniRef50_A5E3M3 | 55.60% | 241 | 5e-91 | Exosome complex exonuclease RRP41 n=30 Tax=Saccharomycetales TaxID=4892 RepID=A5E3M3_LODEL |
| A0A060T9F2_BLAAD | 52.72% | 239 | 2e-93 | ARAD1D14872p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D14872g PE=4 SV=1 |
| Q6CA11_YARLI | 55.04% | 238 | 6e-92 | YALI0D06776p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D06776g PE=4 SV=1 |
| Q5AMR4_CANAL | 55.79% | 242 | 1e-92 | Exosome non-catalytic core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.4582 PE=4 SV=1 |
| RRP41_YEAST | 50.83% | 240 | 1e-84 | Exosome complex component SKI6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI6 PE=1 SV=1 |
| A0A167D414_9ASCO | 57.80% | 173 | 2e-68 | Ski6p OS=Sugiyamaella lignohabitans GN=SKI6 PE=4 SV=1 |
| A0A1E4TM41_9ASCO | 45.68% | 243 | 2e-62 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_56317 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1466
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Domain
-
Domain
1
50
100
150
200
247
Detailed signature matches
no IPR
Unintegrated signatures
-
cd11370 (RNase_PH_R...)
Residue annotation
-
hexamer interface ...
-
Rrp4 interface cd1...
Protein sequence
>MCA_02039_2 MSRVELYSPEGLRVDGRRWNELRSFSCKINTHPSSADGSSYVEQGLTKVICTVKGPREPEGRNQVVTDNVLLNVDITLPP FSTHDRKKRPRNDKRLQEICISLRRLFNEAVLGHLYSRTVIDINLYVVAEDGGLISACVNAATLALIDAGISMLDYVTCC STAMYGETPLLDPIHAEESDVPFVIVGTIGKDTENLSLLLLENKMPLTGLESAIAISLAGSRSIRSMMDAEVRRQGAARQ ATKLQLH
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.